genomes

For complete information and all genome sequence releases, access the JGI portal at http://genome.jgi-psf.org

* No data (draft genome)

 

Genus Species Strain Year IMG Genome ID Tree Species Tree Genome Size Contigs Proteins (Prodigal) Domains (PfamA) Quality Score (QS) 16S rRNA (RNAmmer) tRNA (tRNAscan-SE)
Acidovorax sp. CF316 2009 2511231001 P. deltoides TNP07 7238994 164 7281 2600 0.78 1 51
Acinetobacter calcoaceticus WP19 2009 2582581295 P. trichocarpa Wild 3951709 66 3833 2210 0.92 1 59
Acinetobacter sp. YR461 2010 2615840642 P. deltoides NCP002 3959766 36 3798 2175 0.96 1 58
Albidiferax sp. OV413 2012 2615840603 P. trichocarpa BESC-137-O-2 5736266 23 5252 2477 0.96 1 48
Arthrobacter sp. CF158 2010 2615840536 P. deltoides TNP11 5103453 28 4776 2127 0.96 1 53
Arthrobacter sp. OV118 2012 2609459726 P. trichocarpa BESC-15-O-1 4453182 22 4103 2053 0.89 * 51
Arthrobacter sp. OV407 2012 2609459738 P. trichocarpa BESC-137-O-2 4264397 27 4001 2028 0.96 1 50
Arthrobacter sp. YR096 2010 2615840638 P. deltoides NCP004 4959286 26 4629 2117 0.99 1 55
Arthrobacter sp. OK362 2012 2609459768 P. trichocarpa BESC-211-C-1 4713489 32 4419 2085 0.88 1 52
Arthrobacter sp. OK909 2012 2609459742 P. trichocarpa BESC-4-C-2 5188958 79 4843 2121 0.87 1 51
Bacillus sp. OK634 2012 2615840538 P. trichocarpa BESC-15-C-2 5834130 74 6061 2762 0.87 * 73
Bacillus sp. OK061 2012 2615840539 P. trichocarpa BESC-211-C-1 6321897 88 6543 2831 0.81 * 75
Bacillus sp. YR331 2010 2615840594 P. deltoides NCP001 5517600 77 5629 2747 0.77 * 49
Bacillus sp. BC15 2009 2615840537 P. deltoides B4 5742731 34 5845 2775 0.8 * 58
Bosea sp. OK403 2012 2609459641 P. trichocarpa BESC-4-C-2 6639129 24 6099 2412 0.97 2 49
Bradyrhizobium sp. CF659 2011 2609459633 P. deltoides TNP10 8465016 25 7878 2675 0.97 1 50
Bradyrhizobium sp. YR681 2010 2511231028 P. deltoides NCP002 8046582 254 8377 2621 0.8 1 51
Brevibacillus sp. BC25 2012 2512564013 P. deltoides B4 6286191 49 6123 2625 0.77 1 67
Brevibacillus sp. CF112 2012 2510917027 P. deltoides TNP07 5287437 186 5323 2498 0.74 1 84
Burkholderia sp. WP42 2009 2582581311 P. trichocarpa Wild 6763856 45 6046 2761 0.81 * 57
Burkholderia sp. BT03 2012 2562617112 P. deltoides B1 10918404 135 10056 2897 0.82 1 49
Burkholderia sp. YR520 2010 2615840633 P. deltoides NCP001 7146134 79 6591 2691 0.9 1 45
Burkholderia vietnamiensis WPB 2015 2615840639 P. trichocarpa Wild 6758425 42 6040 2763 0.81 * 57
Burkholderia sp. WP40 2015 2615840645 P. trichocarpa Wild 6766598 43 6051 2760 0.73 * 56
Burkholderia sp. YR281 2010 2615840636 P. deltoides NCP004 10306168 86 9287 2865 0.78 * 46
Caulobacter henricii OK261 2010 2582581279 P. trichocarpa BESC-137-C-1 4980720 21 4591 2332 0.97 3 54
Caulobacter henricii YR570 2012 2582581293 P. deltoides NCP005 5907401 57 5364 2477 0.95 2 51
Caulobacter sp. AP07 2012 2510917020 P. deltoides B1 5657507 778 5433 2433 0.78 1 45
Caulobacter sp. OV484 2010 2585428106 P. trichocarpa BESC-211-O-2 5179711 17 4740 2412 0.94 1 47
Caulobacter henricii CF287 2010 2582581280 P. deltoides TNP07 5994497 57 5425 2503 0.95 2 50
Chitinophaga sp. CF418 2010 2609459644 P. deltoides TNP05 8630000 27 6998 2535 0.89 1 60
Chryseobacterium sp. CF299 2010 2582581282 P. deltoides TNP07 4495830 74 4208 2088 0.94 1 55
Chryseobacterium sp. CF314 2015 2511231000 P. deltoides TNP07 4488346 95 4183 2091 0.92 1 53
Chryseobacterium sp. CF356 2010 2585428061 P. deltoides TNP05B 3939663 65 3821 1952 0.94 1 58
Chryseobacterium sp. CF365 2010 2582581278 P. deltoides TNP08 5296881 56 4815 2210 0.87 1 71
Chryseobacterium sp. OV259 2010 2582581873 P. trichocarpa BESC-42-O-2 3032664 14 2902 1778 0.94 1 43
Chryseobacterium sp. OV279 2010 2588253712 P. trichocarpa BESC-42-O-2 5403181 11 4883 2170 0.94 1 69
Chryseobacterium sp. OV705 2010 2585428045 P. trichocarpa BESC-4-O-3 5203023 65 4745 2146 0.8 1 64
Chryseobacterium sp. OV715 2009 2585428060 P. trichocarpa BESC-4-O-3 5304711 26 4837 2124 0.89 * 71
Chryseobacterium sp. YR005 2009 2585428095 P. deltoides NCP001 3789702 19 3624 1976 0.96 1 52
Chryseobacterium sp. YR203 2009 2588254257 P. deltoides NCP007 5436094 16 5110 2179 0.92 1 70
Chryseobacterium sp. YR221 2009 2588254255 P. deltoides NCP009 5014294 16 4519 2142 0.89 * 66
Chryseobacterium sp. YR459 2009 2585428185 P. deltoides NCP002 4969476 20 4538 2148 0.92 1 70
Chryseobacterium sp. YR460 2009 2585428187 P. deltoides NCP002 4629388 16 4373 2081 0.97 1 64
Chryseobacterium sp. YR477 2009 2585428182 P. deltoides NCP006 5007281 8 4597 2187 0.9 * 65
Chryseobacterium sp. YR480 2012 2585428184 P. deltoides NCP006 4978681 18 4662 2157 0.97 1 71
Chryseobacterium sp. CF284 2010 2582581281 P. deltoides TNP07 4487904 78 4202 2087 0.91 1 52
Chryseobacterium sp. YR561 2012 2585428115 P. deltoides NCP004 4420269 20 4102 2098 0.94 2 74
Chryseobacterium sp. YR485 2012 2585428183 P. deltoides NCP005 5166119 12 4728 2186 0.94 1 75
Cohnella sp. OV330 2012 2615840604 P. trichocarpa BESC-137-O-2 7466843 29 6303 2504 0.81 * 63
Collimonas sp. OK307 Jul-15 2609459734 P. trichocarpa BESC-211-C-1 5184619 * 4817 * * * *
Collimonas sp. OK412 2012 2609459736 P. trichocarpa BESC-4-C-2 5457163 61 4928 2546 0.92 1 49
Collimonas sp. OK242 2012 2609459735 P. trichocarpa BESC-137-C-1 4978279 56 4680 2451 0.95 1 48
Collimonas sp. OK607 2012 2609459737 P. trichocarpa BESC-15-C-2 5374538 90 5126 2504 0.94 1 49
Cupriavidus sp. YR651 2010 2615840592 P. deltoides NCP010 6960118 46 6378 2682 0.94 1 52
Cupriavidus sp. OV096 2012 2615840602 P. trichocarpa BESC-15-O-1 5960440 27 5402 2553 0.94 1 53
Cupriavidus sp. OV038 2012 2609459743 P. trichocarpa BESC-15-O-1 5961672 28 5402 2553 0.94 1 53
Curtobacterium sp. YR515 2010 2616644843 P. deltoides NCP001 3831031 10 3653 1865 0.89 1 47
Duganella sp. CF402 2010 2616644845 P. deltoides TNP05B 6240445 14 5576 2645 0.82 * 65
Duganella sp. OV458 2012 2609459727 P. trichocarpa BESC-211-O-2 6422241 23 5787 2699 0.82 * 66
Dyadobacter sp. SG02 2009 2609459762 P. deltoides B1 8481454 37 7062 2421 0.91 1 36
Dyella sp. OK004 2012 2609459631 P. trichocarpa BESC-211-C-1 4960986 8 4293 2410 0.97 1 48
Ensifer sp. OV372 2012 2609459711 P. trichocarpa BESC-137-O-2 7328293 67 7004 2666 0.86 1 51
Ensifer sp. YR511 2010 2615840643 P. deltoides NCP001 8258323 91 7752 2701 0.93 1 54
Enterobacter asburiae PDN3 2009 2585428186 P. DN hybrid hybrid 4625174 14 4535 2757 0.87 1 69
Flavobacterium sp. FV08 2009 2615840595 P. deltoides B3 5567309 18 4744 2275 0.92 1 59
Flavobacterium sp. OV086 2012 2609459741 P. trichocarpa BESC-15-O-1 6217807 60 5460 2358 0.83 1 55
Flavobacterium sp. CF136 2012 2513020052 P. deltoides TNP09A 5120511 139 4422 2797 0.75 1 48
Herbaspirillum sp. CF444 2015 2511231003 P. deltoides TNP10 5606035 186 5064 2348 0.78 1 42
Herbaspirillum sp. YR522 2010 2511231026 P. deltoides NCP001 5225445 288 5025 2314 0.74 1 39
Herbiconiux sp. YR403 2009 2585428094 P. deltoides NCP010 3604039 13 3392 1840 0.96 1 45
Janthinobacterium sp. OK676 2012 2609459643 P. trichocarpa BESC-15-C-2 6271734 31 5596 2721 0.81 * 65
Lysinibacillus sp. YR326 2010 2615840593 P. deltoides NCP009 5424431 75 5487 2476 0.81 * 62
Lysobacter sp. YR284 2010 2615840641 P. deltoides NCP006 6249540 46 5066 2508 0.96 4 64
Lysobacter sp. CF310 2010 2616644831 P. deltoides TNP08 4729332 12 4234 2346 0.96 1 49
Methylibium sp. CF468 2010 2585428058 P. deltoides TNP05 6853932 72 6225 2709 0.95 3 54
Methylibium sp. YR605 2012 2585428057 P. deltoides NCP007 6737412 58 6174 2645 0.96 2 52
Methylibium sp. CF059 2009 2585428062 P. deltoides TNP06 6842168 38 6285 2702 0.96 1 57
Methylobacterium sp. AP11 2009 2609459615 P. deltoides B4 6983078 56 6430 2599 0.81 * 65
Methylobacterium sp. YR596 2010 2615840644 P. deltoides NCP006 6572329 84 6152 2560 0.8 * 66
Methylobacterium sp. YR668 2010 2609459632 P. deltoides NCP007 6623161 99 6388 2502 0.84 1 48
Microbacterium sp. CF046 2010 2609459760 P. deltoides TNP05B 3993808 3 3721 1841 1 1 46
Microbacterium sp. CF335 2010 2585428157 P. deltoides TNP05B 3018951 4 2857 1680 1 2 46
Microbacterium sp. CF332 2010 2609459766 P. deltoides TNP05B 3269659 8 3129 1794 0.92 1 47
Mucilaginibacter sp. OK098 2012 2609459642 P. trichocarpa BESC-211-C-1 7213459 23 6136 2379 0.97 4 49
Mucilaginibacter sp. YR332 2010 2616644844 P. deltoides NCP001 7718017 19 6372 2426 0.97 1 53
Novosphingobium sp. AP12 2012 2510917021 P. deltoides U1 5705459 383 5607 2339 0.79 1 51
Paenibacillus chondroitinus OK414 2010 2585428059 P. trichocarpa BESC-4-C-2 8696589 101 8119 2656 0.87 1 87
Paenibacillus sp. OV031 2012 2616644976 P. trichocarpa BESC-15-O-1 6875686 17 6205 2579 0.84 * 58
Paenibacillus sp. YR247 2010 2615840634 P. deltoides NCP008 6252761 81 6201 2501 0.8 * 98
Pantoea sp. GM01 2015 2511231035 P. deltoides U3 5341610 76 5107 2692 0.79 1 57
Pantoea sp. YR343 2010 2511231025 P. deltoides NCP007 5324661 56 4992 2658 0.76 1 65
Pedobacter sp. OK626 2012 2609459674 P. trichocarpa BESC-15-C-2 6763971 35 5552 2296 0.81 * 51
Phyllobacterium sp. YR531 2010 2511231027 P. deltoides NCP002 5013807 39 4970 2435 0.9 1 43
Polaromonas sp. OV174 2012 2609459740 P. trichocarpa BESC-42-O-2 4531508 61 4388 2355 0.95 1 52
Polaromonas sp. CF318 2015 2511231002 P. deltoides TNP07 5042903 60 4889 2396 0.85 1 51
Polaromonas sp. YR568 2010 2615840640 P. deltoides NCP005 4827503 22 4513 2277 0.96 1 54
Pseudomonas sp. GM102 2015 2511231004 P. deltoides U3 6669789 149 6126 2829 0.73 1 61
Pseudomonas sp. GM16 2015 2511231031 P. deltoides B1 6558529 62 5981 2199 0.91 1 46
Pseudomonas sp. GM17 2010 2511231006 P. deltoides B1 6794709 288 6188 2833 0.73 1 45
Pseudomonas sp. GM18 2010 2511231007 P. deltoides B1 6306603 106 5797 2747 0.76 1 61
Pseudomonas sp. GM21 2010 2511231008 P. deltoides B1 6624100 230 6154 2736 0.8 1 57
Pseudomonas sp. GM24 2010 2511231032 P. deltoides B1 6536105 211 5974 2795 0.67 1 49
Pseudomonas sp. GM25 2010 2511231010 P. deltoides B2 6373152 76 5836 2798 0.77 1 61
Pseudomonas sp. GM30 2010 2511231011 P. deltoides B2 6149768 32 5696 2780 0.86 * 61
Pseudomonas sp. GM33 2010 2511231012 P. deltoides B2 6738011 212 6177 2779 0.69 1 58
Pseudomonas sp. GM41 2010 2511231013 P. deltoides B3 6631502 13 6150 2791 0.97 4 64
Pseudomonas sp. GM48 2010 2511231014 P. deltoides B4 6462302 152 5977 2722 0.72 1 49
Pseudomonas sp. GM49 2010 2511231015 P. deltoides B4 6598026 76 6340 2741 0.72 1 52
Pseudomonas sp. GM50 2010 2511231016 P. deltoides B4 6704427 142 6151 2830 0.81 1 61
Pseudomonas sp. GM55 2010 2511231017 P. deltoides B4 6503007 160 6068 2717 0.77 1 60
Pseudomonas putida PD1 2009 2585428046 P. deltoides * 5997141 37 5462 2658 0.9 1 65
Pseudomonas sp. GM67 2010 2511231019 P. deltoides U1 6520662 149 6086 2809 0.76 1 56
Pseudomonas sp. GM74 2010 2511231020 P. deltoides U2 6115223 161 5649 2722 0.74 1 53
Pseudomonas sp. GM78 2010 2511231021 P. deltoides U2 7302637 184 6804 2820 0.66 1 52
Pseudomonas sp. GM79 2010 2511231022 P. deltoides U2 6719296 115 6146 2820 0.75 1 61
Pseudomonas sp. GM80 2010 2511231023 P. deltoides U2 6808468 155 6334 2878 0.76 1 62
Pseudomonas sp. GM84 2010 2511231024 P. deltoides U3 5835885 208 5384 2636 0.8 1 64
Pseudomonas sp. OK266 2012 2609459675 P. trichocarpa BESC-137-C-1 6581720 31 5964 2839 0.81 * 61
Pseudomonas sp. OK272 2012 2609459710 P. trichocarpa BESC-137-C-1 5293913 50 4849 2587 0.85 * 55
Pseudomonas sp. OK602 2012 2609459712 P. trichocarpa BESC-15-C-2 5289324 49 4854 2585 0.85 * 57
Pseudomonas sp. PTA1 2009 2582581296 P. TA hybrid hybrid 6094287 42 5586 2786 0.91 2 58
Pseudomonas sp. Snoq117.2 2015 2609459739 P. trichocarpa * 5543492 49 5248 2642 0.78 * 54
Pseudomonas sp. GM60 2010 2511231018 P. deltoides B4 6436256 160 5991 2774 0.75 1 59
Pseudoxanthomonas sp. CF125 2010 2615840523 P. deltoides TNP09 4216411 6 3782 2290 0.97 1 48
Rahnella aquatilis OV588 2010 2585427592 P. trichocarpa BESC-211-O-2 5370892 45 4941 2796 0.85 1 61
Rahnella aquatilis OV744 2009 2585427591 P. trichocarpa BESC-4-O-3 5482980 58 5110 2805 0.83 1 64
Rahnella sp. WP5 2009 2582581297 P. trichocarpa Wild 5444112 32 5087 2811 0.94 1 63
Rhizobacter sp. OV335 Jul-15 2588253510 P. trichocarpa BESC-137-O-2 6901809 * 6275 * * * *
Rhizobium alamii YR540 2012 2582581298 P. deltoides NCP002 7315509 33 7067 2584 0.97 1 48
Rhizobium alamii YR584 2012 2585427529 P. deltoides NCP006 7395659 36 7140 2599 0.96 1 47
Rhizobium leguminosarum CF307 2010 2585427528 P. deltoides TNP07 6842387 35 6516 2602 0.96 1 47
Rhizobium leguminosarum OV152 2010 2585427526 P. trichocarpa BESC-42-O-2 7258840 45 6979 2597 0.96 1 45
Rhizobium leguminosarum OV483 2010 2582581299 P. trichocarpa BESC-211-O-2 6518058 80 6459 2541 0.85 1 46
Rhizobium leguminosarum YR374 2009 2585427527 P. deltoides NCP004 7273426 80 6894 2541 0.85 1 46
Rhizobium rhizogenes CF262 2009 2585428125 P. deltoides TNP11 6662905 16 6364 2545 1 1 48
Rhizobium rhizogenes CF263 2009 2585427609 P. deltoides TNP11 6667127 16 6383 2546 0.97 1 48
Rhizobium rhizogenes OK036 2010 2582581316 P. trichocarpa BESC-211-C-1 7774528 36 7414 2643 0.96 1 50
Rhizobium rhizogenes OV677 2010 2585427608 P. trichocarpa BESC-4-O-3 6544331 20 6253 2488 0.92 1 50
Rhizobium rhizogenes YR147 2009 2582581315 P. deltoides NCP009 7318924 44 7008 2639 0.96 1 50
Rhizobium sp. AP16 2012 2510917022 P. deltoides B1 6504556 113 6205 2524 0.8 1 42
Rhizobium sp. CF048 2009 2585427590 P. deltoides TNP05B 6824633 49 6702 2572 0.96 1 48
Rhizobium sp. CF080 2012 2562617114 P. deltoides TNP02B 7049533 16 6684 2564 0.97 3 52
Rhizobium sp. CF097 2009 2582581866 P. deltoides TNP04 6859583 61 6629 2583 0.95 1 50
Rhizobium sp. CF122 2012 2510917028 P. deltoides TNP08 6185411 98 6157 2543 0.87 1 45
Rhizobium sp. CF142 2012 2510917030 P. deltoides TNP10 7460662 82 7306 2613 0.8 1 46
Rhizobium sp. CF258 2009 2582581865 P. deltoides TNP11 6644329 35 6374 2596 0.94 1 46
Rhizobium sp. CF394 2010 2582581294 P. deltoides TNP03 6626667 51 6428 2571 0.96 1 49
Rhizobium sp. CF80 Jul-15 2510917026 * * 7046020 * 7619 * * * *
Rhizobium sp. OK494 2010 2582581308 P. trichocarpa BESC-4-C-2 7413247 77 7055 2663 0.95 1 45
Rhizobium sp. OK665 2010 2582581283 P. trichocarpa BESC-15-C-2 6030556 36 5747 2534 0.96 1 45
Rhizobium sp. OV201 2010 2582581867 P. trichocarpa BESC-42-O-2 7184437 62 7080 2597 0.88 1 46
Rhizobium sp. PDO1-076 2010 2510461069 P. deltoides PDO1 5505000 441 5480 2508 0.87 1 44
Rhizobium sp. YR060 2009 2582581307 P. deltoides NCP002 6597605 30 6280 2559 0.99 1 48
Rhizobium sp. YR295 2009 2582581306 P. deltoides NCP002 6450535 29 6149 2555 0.82 * 50
Rhizobium sp. YR519 2012 2582581304 P. deltoides NCP001 5831370 27 5614 2508 0.91 1 44
Rhizobium sp. YR528 2012 2585427594 P. deltoides NCP002 6180594 28 5895 2506 0.92 1 44
Rhizobium tropici CF286 2010 2585427593 P. deltoides TNP07 7141551 30 6824 2630 0.89 1 49
Rhizobium tropici PTD1 2009 2585427595 P. TD hybrid * 8054993 74 7710 2681 0.98 1 48
Rhizobium tropici YR530 2012 2585427531 P. deltoides NCP001 6992870 37 6623 2556 0.94 1 45
Rhizobium tropici YR635 2012 2585427530 P. deltoides NCP009 7383882 49 6987 2616 0.88 1 47
Roseateles sp. YR242 2010 2615840637 P. deltoides NCP003 5976631 38 5083 2577 0.94 1 53
Sphingobium sp. AP49 2012 2512564014 P. deltoides B1 4639632 49 4658 2311 0.81 1 52
Sphingomonas wittichii YR128 2009 2582581305 P. deltoides NCP002 4895574 78 4718 2329 0.94 3 54
Stenotrophomonas sp. YR243 2010 2617270730 P. deltoides NCP007 4682891 12 4327 2444 0.87 1 63
Streptomyces atratus OK008 2010 2582581312 P. trichocarpa BESC-211-C-1 7308206 88 6740 2359 0.9 1 66
Streptomyces atratus OK807 Jul-15 2616644941 P. trichocarpa BESC-42-C-3 8510691 * 7740 * * * *
Streptomyces mirabilis OK461 Jul-15 2616644814 P. trichocarpa BESC-4-C-2 11555299 * 10578 * * * *
Streptomyces mirabilis OV308 2010 2582581313 P. trichocarpa BESC-137-O-2 10042643 81 9126 2637 0.9 1 67
Streptomyces mirabilis YR139 2009 2582581314 P. deltoides NCP006 11452267 155 10596 2668 0.87 1 71
Streptomyces sp. CF124 2010 2609459763 P. deltoides TNP09 9995208 106 8594 2573 0.88 1 73
Streptomyces sp. CF386 2010 2615840541 P. deltoides TNP02B 10622898 56 9434 2679 0.89 1 67
Streptomyces sp. OK006 2010 2568526031 P. trichocarpa BESC-211-C-1 12228443 429 11172 2724 0.86 1 76
Streptomyces sp. OK074 2010 2568526032 P. trichocarpa BESC-211-C-1 10385325 365 9009 2524 0.86 1 63
Streptomyces sp. OK210 2012 2615840540 P. trichocarpa BESC-137-C-1 8088436 34 7222 2499 0.94 1 68
Streptomyces sp. OV320 2010 2568526033 P. trichocarpa BESC-137-O-2 10038922 195 9126 2619 0.96 1 80
Streptomyces sp. OV450 2010 2568526034 P. trichocarpa BESC-137-O-2 9031910 763 8575 2556 0.81 1 74
Streptomyces sp. YR375 2010 2615840635 P. deltoides NCP004 9070480 122 7795 2487 0.82 * 68
Tardiphaga sp. OK245 2012 2609459751 P. trichocarpa BESC-137-C-1 6356861 12 6039 2470 0.97 1 48
Tardiphaga sp. OK246 2012 2609459765 P. trichocarpa BESC-137-C-1 6748631 19 6420 2488 0.97 1 48
Variovorax sp. CF313 2015 2513020051 P. deltoides TNP07 6053213 253 5732 2509 0.9 1 49
Variovorax sp. OK605 2012 2609459724 P. trichocarpa BESC-15-C-2 8718524 42 8015 2838 0.94 1 60

References:

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