genomes

For complete information and all genome sequence releases, access the JGI portal at http://genome.jgi-psf.org

* No data (draft genome)

GenusSpeciesStrainYearIMG Genome IDTree SpeciesTreeGenome SizeContigsProteins (Prodigal)Domains (PfamA)Quality Score (QS)16S rRNA (RNAmmer)tRNA (tRNAscan-SE)
Acidovoraxsp.CF31620092511231001P. deltoidesTNP077238994164728126000.78151
AcinetobactercalcoaceticusWP1920092582581295P. trichocarpaWild395170966383322100.92159
Acinetobactersp.YR46120102615840642P. deltoidesNCP002395976636379821750.96158
Albidiferaxsp.OV41320122615840603P. trichocarpaBESC-137-O-2573626623525224770.96148
Arthrobactersp.CF15820102615840536P. deltoidesTNP11510345328477621270.96153
Arthrobactersp.OV11820122609459726P. trichocarpaBESC-15-O-1445318222410320530.89*51
Arthrobactersp.OV40720122609459738P. trichocarpaBESC-137-O-2426439727400120280.96150
Arthrobactersp.YR09620102615840638P. deltoidesNCP004495928626462921170.99155
Arthrobactersp.OK36220122609459768P. trichocarpaBESC-211-C-1471348932441920850.88152
Arthrobactersp.OK90920122609459742P. trichocarpaBESC-4-C-2518895879484321210.87151
Bacillussp.OK63420122615840538P. trichocarpaBESC-15-C-2583413074606127620.87*73
Bacillussp.OK06120122615840539P. trichocarpaBESC-211-C-1632189788654328310.81*75
Bacillussp.YR33120102615840594P. deltoidesNCP001551760077562927470.77*49
Bacillussp.BC1520092615840537P. deltoidesB4574273134584527750.8*58
Boseasp.OK40320122609459641P. trichocarpaBESC-4-C-2663912924609924120.97249
Bradyrhizobiumsp.CF65920112609459633P. deltoidesTNP10846501625787826750.97150
Bradyrhizobiumsp.YR68120102511231028P. deltoidesNCP0028046582254837726210.8151
Brevibacillussp.BC2520122512564013P. deltoidesB4628619149612326250.77167
Brevibacillussp.CF11220122510917027P. deltoidesTNP075287437186532324980.74184
Burkholderiasp.WP4220092582581311P. trichocarpaWild676385645604627610.81*57
Burkholderiasp.BT0320122562617112P. deltoidesB1109184041351005628970.82149
Burkholderiasp.YR52020102615840633P. deltoidesNCP001714613479659126910.9145
BurkholderiavietnamiensisWPB20152615840639P. trichocarpaWild675842542604027630.81*57
Burkholderiasp.WP4020152615840645P. trichocarpaWild676659843605127600.73*56
Burkholderiasp.YR28120102615840636P. deltoidesNCP0041030616886928728650.78*46
CaulobacterhenriciiOK26120102582581279P. trichocarpaBESC-137-C-1498072021459123320.97354
CaulobacterhenriciiYR57020122582581293P. deltoidesNCP005590740157536424770.95251
Caulobactersp.AP0720122510917020P. deltoidesB15657507778543324330.78145
Caulobactersp.OV48420102585428106P. trichocarpaBESC-211-O-2517971117474024120.94147
CaulobacterhenriciiCF28720102582581280P. deltoidesTNP07599449757542525030.95250
Chitinophagasp.CF41820102609459644P. deltoidesTNP05863000027699825350.89160
Chryseobacteriumsp.CF29920102582581282P. deltoidesTNP07449583074420820880.94155
Chryseobacteriumsp.CF31420152511231000P. deltoidesTNP07448834695418320910.92153
Chryseobacteriumsp.CF35620102585428061P. deltoidesTNP05B393966365382119520.94158
Chryseobacteriumsp.CF36520102582581278P. deltoidesTNP08529688156481522100.87171
Chryseobacteriumsp.OV25920102582581873P. trichocarpaBESC-42-O-2303266414290217780.94143
Chryseobacteriumsp.OV27920102588253712P. trichocarpaBESC-42-O-2540318111488321700.94169
Chryseobacteriumsp.OV70520102585428045P. trichocarpaBESC-4-O-3520302365474521460.8164
Chryseobacteriumsp.OV71520092585428060P. trichocarpaBESC-4-O-3530471126483721240.89*71
Chryseobacteriumsp.YR00520092585428095P. deltoidesNCP001378970219362419760.96152
Chryseobacteriumsp.YR20320092588254257P. deltoidesNCP007543609416511021790.92170
Chryseobacteriumsp.YR22120092588254255P. deltoidesNCP009501429416451921420.89*66
Chryseobacteriumsp.YR45920092585428185P. deltoidesNCP002496947620453821480.92170
Chryseobacteriumsp.YR46020092585428187P. deltoidesNCP002462938816437320810.97164
Chryseobacteriumsp.YR47720092585428182P. deltoidesNCP00650072818459721870.9*65
Chryseobacteriumsp.YR48020122585428184P. deltoidesNCP006497868118466221570.97171
Chryseobacteriumsp.CF28420102582581281P. deltoidesTNP07448790478420220870.91152
Chryseobacteriumsp.YR56120122585428115P. deltoidesNCP004442026920410220980.94274
Chryseobacteriumsp.YR48520122585428183P. deltoidesNCP005516611912472821860.94175
Cohnellasp.OV33020122615840604P. trichocarpaBESC-137-O-2746684329630325040.81*63
Collimonassp.OK307Jul-152609459734P. trichocarpaBESC-211-C-15184619*4817****
Collimonassp.OK41220122609459736P. trichocarpaBESC-4-C-2545716361492825460.92149
Collimonassp.OK24220122609459735P. trichocarpaBESC-137-C-1497827956468024510.95148
Collimonassp.OK60720122609459737P. trichocarpaBESC-15-C-2537453890512625040.94149
Cupriavidussp.YR65120102615840592P. deltoidesNCP010696011846637826820.94152
Cupriavidussp.OV09620122615840602P. trichocarpaBESC-15-O-1596044027540225530.94153
Cupriavidussp.OV03820122609459743P. trichocarpaBESC-15-O-1596167228540225530.94153
Curtobacteriumsp.YR51520102616644843P. deltoidesNCP001383103110365318650.89147
Duganellasp.CF40220102616644845P. deltoidesTNP05B624044514557626450.82*65
Duganellasp.OV45820122609459727P. trichocarpaBESC-211-O-2642224123578726990.82*66
Dyadobactersp.SG0220092609459762P. deltoidesB1848145437706224210.91136
Dyellasp.OK00420122609459631P. trichocarpaBESC-211-C-149609868429324100.97148
Ensifersp.OV37220122609459711P. trichocarpaBESC-137-O-2732829367700426660.86151
Ensifersp.YR51120102615840643P. deltoidesNCP001825832391775227010.93154
EnterobacterasburiaePDN320092585428186P. DN hybridhybrid462517414453527570.87169
Flavobacteriumsp.FV0820092615840595P. deltoidesB3556730918474422750.92159
Flavobacteriumsp.OV08620122609459741P. trichocarpaBESC-15-O-1621780760546023580.83155
Flavobacteriumsp.CF13620122513020052P. deltoidesTNP09A5120511139442227970.75148
Herbaspirillumsp.CF44420152511231003P. deltoidesTNP105606035186506423480.78142
Herbaspirillumsp.YR52220102511231026P. deltoidesNCP0015225445288502523140.74139
Herbiconiuxsp.YR40320092585428094P. deltoidesNCP010360403913339218400.96145
Janthinobacteriumsp.OK67620122609459643P. trichocarpaBESC-15-C-2627173431559627210.81*65
Lysinibacillussp.YR32620102615840593P. deltoidesNCP009542443175548724760.81*62
Lysobactersp.YR28420102615840641P. deltoidesNCP006624954046506625080.96464
Lysobactersp.CF31020102616644831P. deltoidesTNP08472933212423423460.96149
Methylibiumsp.CF46820102585428058P. deltoidesTNP05685393272622527090.95354
Methylibiumsp.YR60520122585428057P. deltoidesNCP007673741258617426450.96252
Methylibiumsp.CF05920092585428062P. deltoidesTNP06684216838628527020.96157
Methylobacteriumsp.AP1120092609459615P. deltoidesB4698307856643025990.81*65
Methylobacteriumsp.YR59620102615840644P. deltoidesNCP006657232984615225600.8*66
Methylobacteriumsp.YR66820102609459632P. deltoidesNCP007662316199638825020.84148
Microbacteriumsp.CF04620102609459760P. deltoidesTNP05B39938083372118411146
Microbacteriumsp.CF33520102585428157P. deltoidesTNP05B30189514285716801246
Microbacteriumsp.CF33220102609459766P. deltoidesTNP05B32696598312917940.92147
Mucilaginibactersp.OK09820122609459642P. trichocarpaBESC-211-C-1721345923613623790.97449
Mucilaginibactersp.YR33220102616644844P. deltoidesNCP001771801719637224260.97153
Novosphingobiumsp.AP1220122510917021P. deltoidesU15705459383560723390.79151
PaenibacilluschondroitinusOK41420102585428059P. trichocarpaBESC-4-C-28696589101811926560.87187
Paenibacillussp.OV03120122616644976P. trichocarpaBESC-15-O-1687568617620525790.84*58
Paenibacillussp.YR24720102615840634P. deltoidesNCP008625276181620125010.8*98
Pantoeasp.GM0120152511231035P. deltoidesU3534161076510726920.79157
Pantoeasp.YR34320102511231025P. deltoidesNCP007532466156499226580.76165
Pedobactersp.OK62620122609459674P. trichocarpaBESC-15-C-2676397135555222960.81*51
Phyllobacteriumsp.YR53120102511231027P. deltoidesNCP002501380739497024350.9143
Polaromonassp.OV17420122609459740P. trichocarpaBESC-42-O-2453150861438823550.95152
Polaromonassp.CF31820152511231002P. deltoidesTNP07504290360488923960.85151
Polaromonassp.YR56820102615840640P. deltoidesNCP005482750322451322770.96154
Pseudomonassp.GM10220152511231004P. deltoidesU36669789149612628290.73161
Pseudomonassp.GM1620152511231031P. deltoidesB1655852962598121990.91146
Pseudomonassp.GM1720102511231006P. deltoidesB16794709288618828330.73145
Pseudomonassp.GM1820102511231007P. deltoidesB16306603106579727470.76161
Pseudomonassp.GM2120102511231008P. deltoidesB16624100230615427360.8157
Pseudomonassp.GM2420102511231032P. deltoidesB16536105211597427950.67149
Pseudomonassp.GM2520102511231010P. deltoidesB2637315276583627980.77161
Pseudomonassp.GM3020102511231011P. deltoidesB2614976832569627800.86*61
Pseudomonassp.GM3320102511231012P. deltoidesB26738011212617727790.69158
Pseudomonassp.GM4120102511231013P. deltoidesB3663150213615027910.97464
Pseudomonassp.GM4820102511231014P. deltoidesB46462302152597727220.72149
Pseudomonassp.GM4920102511231015P. deltoidesB4659802676634027410.72152
Pseudomonassp.GM5020102511231016P. deltoidesB46704427142615128300.81161
Pseudomonassp.GM5520102511231017P. deltoidesB46503007160606827170.77160
PseudomonasputidaPD120092585428046P. deltoides*599714137546226580.9165
Pseudomonassp.GM6720102511231019P. deltoidesU16520662149608628090.76156
Pseudomonassp.GM7420102511231020P. deltoidesU26115223161564927220.74153
Pseudomonassp.GM7820102511231021P. deltoidesU27302637184680428200.66152
Pseudomonassp.GM7920102511231022P. deltoidesU26719296115614628200.75161
Pseudomonassp.GM8020102511231023P. deltoidesU26808468155633428780.76162
Pseudomonassp.GM8420102511231024P. deltoidesU35835885208538426360.8164
Pseudomonassp.OK26620122609459675P. trichocarpaBESC-137-C-1658172031596428390.81*61
Pseudomonassp.OK27220122609459710P. trichocarpaBESC-137-C-1529391350484925870.85*55
Pseudomonassp.OK60220122609459712P. trichocarpaBESC-15-C-2528932449485425850.85*57
Pseudomonassp.PTA120092582581296P. TA hybridhybrid609428742558627860.91258
Pseudomonassp.Snoq117.220152609459739P. trichocarpa*554349249524826420.78*54
Pseudomonassp.GM6020102511231018P. deltoidesB46436256160599127740.75159
Pseudoxanthomonassp.CF12520102615840523P. deltoidesTNP0942164116378222900.97148
RahnellaaquatilisOV58820102585427592P. trichocarpaBESC-211-O-2537089245494127960.85161
RahnellaaquatilisOV74420092585427591P. trichocarpaBESC-4-O-3548298058511028050.83164
Rahnellasp.WP520092582581297P. trichocarpaWild544411232508728110.94163
Rhizobactersp.OV335Jul-152588253510P. trichocarpaBESC-137-O-26901809*6275****
RhizobiumalamiiYR54020122582581298P. deltoidesNCP002731550933706725840.97148
RhizobiumalamiiYR58420122585427529P. deltoidesNCP006739565936714025990.96147
RhizobiumleguminosarumCF30720102585427528P. deltoidesTNP07684238735651626020.96147
RhizobiumleguminosarumOV15220102585427526P. trichocarpaBESC-42-O-2725884045697925970.96145
RhizobiumleguminosarumOV48320102582581299P. trichocarpaBESC-211-O-2651805880645925410.85146
RhizobiumleguminosarumYR37420092585427527P. deltoidesNCP004727342680689425410.85146
RhizobiumrhizogenesCF26220092585428125P. deltoidesTNP11666290516636425451148
RhizobiumrhizogenesCF26320092585427609P. deltoidesTNP11666712716638325460.97148
RhizobiumrhizogenesOK03620102582581316P. trichocarpaBESC-211-C-1777452836741426430.96150
RhizobiumrhizogenesOV67720102585427608P. trichocarpaBESC-4-O-3654433120625324880.92150
RhizobiumrhizogenesYR14720092582581315P. deltoidesNCP009731892444700826390.96150
Rhizobiumsp.AP1620122510917022P. deltoidesB16504556113620525240.8142
Rhizobiumsp.CF04820092585427590P. deltoidesTNP05B682463349670225720.96148
Rhizobiumsp.CF08020122562617114P. deltoidesTNP02B704953316668425640.97352
Rhizobiumsp.CF09720092582581866P. deltoidesTNP04685958361662925830.95150
Rhizobiumsp.CF12220122510917028P. deltoidesTNP08618541198615725430.87145
Rhizobiumsp.CF14220122510917030P. deltoidesTNP10746066282730626130.8146
Rhizobiumsp.CF25820092582581865P. deltoidesTNP11664432935637425960.94146
Rhizobiumsp.CF39420102582581294P. deltoidesTNP03662666751642825710.96149
Rhizobiumsp.CF80Jul-152510917026**7046020*7619****
Rhizobiumsp.OK49420102582581308P. trichocarpaBESC-4-C-2741324777705526630.95145
Rhizobiumsp.OK66520102582581283P. trichocarpaBESC-15-C-2603055636574725340.96145
Rhizobiumsp.OV20120102582581867P. trichocarpaBESC-42-O-2718443762708025970.88146
Rhizobiumsp.PDO1-07620102510461069P. deltoidesPDO15505000441548025080.87144
Rhizobiumsp.YR06020092582581307P. deltoidesNCP002659760530628025590.99148
Rhizobiumsp.YR29520092582581306P. deltoidesNCP002645053529614925550.82*50
Rhizobiumsp.YR51920122582581304P. deltoidesNCP001583137027561425080.91144
Rhizobiumsp.YR52820122585427594P. deltoidesNCP002618059428589525060.92144
RhizobiumtropiciCF28620102585427593P. deltoidesTNP07714155130682426300.89149
RhizobiumtropiciPTD120092585427595P. TD hybrid*805499374771026810.98148
RhizobiumtropiciYR53020122585427531P. deltoidesNCP001699287037662325560.94145
RhizobiumtropiciYR63520122585427530P. deltoidesNCP009738388249698726160.88147
Roseatelessp.YR24220102615840637P. deltoidesNCP003597663138508325770.94153
Sphingobiumsp.AP4920122512564014P. deltoidesB1463963249465823110.81152
SphingomonaswittichiiYR12820092582581305P. deltoidesNCP002489557478471823290.94354
Stenotrophomonassp.YR24320102617270730P. deltoidesNCP007468289112432724440.87163
StreptomycesatratusOK00820102582581312P. trichocarpaBESC-211-C-1730820688674023590.9166
StreptomycesatratusOK807Jul-152616644941P. trichocarpaBESC-42-C-38510691*7740****
StreptomycesmirabilisOK461Jul-152616644814P. trichocarpaBESC-4-C-211555299*10578****
StreptomycesmirabilisOV30820102582581313P. trichocarpaBESC-137-O-21004264381912626370.9167
StreptomycesmirabilisYR13920092582581314P. deltoidesNCP006114522671551059626680.87171
Streptomycessp.CF12420102609459763P. deltoidesTNP099995208106859425730.88173
Streptomycessp.CF38620102615840541P. deltoidesTNP02B1062289856943426790.89167
Streptomycessp.OK00620102568526031P. trichocarpaBESC-211-C-1122284434291117227240.86176
Streptomycessp.OK07420102568526032P. trichocarpaBESC-211-C-110385325365900925240.86163
Streptomycessp.OK21020122615840540P. trichocarpaBESC-137-C-1808843634722224990.94168
Streptomycessp.OV32020102568526033P. trichocarpaBESC-137-O-210038922195912626190.96180
Streptomycessp.OV45020102568526034P. trichocarpaBESC-137-O-29031910763857525560.81174
Streptomycessp.YR37520102615840635P. deltoidesNCP0049070480122779524870.82*68
Tardiphagasp.OK24520122609459751P. trichocarpaBESC-137-C-1635686112603924700.97148
Tardiphagasp.OK24620122609459765P. trichocarpaBESC-137-C-1674863119642024880.97148
Variovoraxsp.CF31320152513020051P. deltoidesTNP076053213253573225090.9149
Variovoraxsp.OK60520122609459724P. trichocarpaBESC-15-C-2871852442801528380.94160

References:

Prodigal: prokaryotic gene recognition and translation initiation site identification.
Hyatt D, Chen GL, Locascio PF, Land ML, Larimer FW, Hauser LJ.
BMC Bioinformatics, 11:119 (2010).
[PubMed]

Pfam: the protein families database.
Finn RD, Bateman A, Clements J, Coggill P, Eberhardt RY, Eddy SR, Heger A, Hetherington K, Holm L, Mistry J, Sonnhammer EL, Tate J, Punta M.
Nucleic Acids Research, 42:D222-320, (Database issue; 2014).
[PubMed]

Quality scores for 32,000 genomes.
Land ML, Hyatt D, Jun SR, Kora GH, Hauser LJ, Lukjancenko O, Ussery DW.
Stand Genomic Science, 9:20 (2014).
[PubMed]

RNAmmer: consistent and rapid annotation of ribosomal RNA genes.
Lagesen K, Hallin P, Rødland EA, Staerfeldt HH, Rognes T, Ussery DW.
Nucleic Acids Research, 35:3100-3108, (2007).
[PubMed]

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.
Lowe TM, Eddy SR.
Nucleic Acids Research, 25:955-964, (1997).
[PubMed]