Van Den Bossche et al. (2026) Microbiome

The Metaproteomics Initiative was officially launched in 2021 to strengthen collaboration, promote knowledge exchange, and support and lead standardization efforts within the growing metaproteomics community. Over the past 5 years, the Initiative has developed into a structured, global network of researchers. It has launched community-driven benchmark studies, helped shape emerging metadata and reporting standards, developed practical guidance and training materials, organized international symposia, and fostered connections across the microbiome research landscape (https://metaproteomics.org/). We outline the Initiative’s organization, activities, achievements, and ongoing efforts, and reflect on how sustained, community-led coordination has shaped the development of metaproteomics as a field. We further position the Grand Metaproteome Challenges as a next step toward coordinated, community-scale biological research, aimed at advancing functional microbiome studies across clinical, industrial, and environmental application domains, and invite engagement from the wider microbiome and omics communities.

Van Den Bossche T, Grenga L, Alves G, Arntzen MO, Benndorf D, Brauer M, Figeys D, Henry C, Hettich RL, Heyer R, Jagtap PD, Jehmlich N, Kleiner M, Li L, Mesuere B, Pabst M, Pandhal J, Pope PB, Seifert J, Trautwein-Schult A, Verschaffelt P, Wilmes P, Armengaud J, Kunath BJ. (2026) The Metaproteomics Initiative: Five Years of Community-Driven Progress. Microbiome. DOI:10.1186/s40168-026-02463-0