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Lu et al. 2025 Scientific Reports
Poplar Transformation with Variable Explant Sources to Maximize Transformation Efficiency Haiwei Lu,…
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LipoCLEAN: A Machine Learning Filter to Improve Untargeted Lipid Identification Confidence Steven…
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Beattie et al. 2024 Phytopathology
From microbes to microbiomes: Applications for plant health and sustainable agriculture Gwyn…
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Fracchia et al. 2024 bioRxiv
Microbe tree metabolite interactions in the soil – phyllosphere continuum of poplar…
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Plett et al. 2024 The Mycota
Masters of Manipulation: How Our Molecular Understanding of Model Symbiotic Fungi and…
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Wang et al. 2024 mSystems
Formation of a constructed microbial community in a nutrient-rich environment indicates bacterial…
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Simon et al. 2024 New Phytologist
Genetic underpinnings of arthropod community distributions in Populus trichocarpa Sandra J. Simon, Anna…
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Mudbhari et al. 2023 bioRxiv
Decoding the chemical language of Suillus fungi: genome mining and untargeted metabolomics…
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Lash et al. 2024 Functional Ecology
Ant handling changes myrmecochore seed coat microbiomes and alters diversity of seed-borne…
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Argiroff et al. 2024 mSystems
Seasonality and longer-term development generate temporal dynamics in the Populus microbiome William A. Argiroff, Alyssa…
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Marqués-Gálvez J.E. et al. 2024 New Phytologist
Populus MYC2 orchestrates root transcriptional reprogramming of defence pathway to impair Laccaria bicolor ectomycorrhizal development…
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Guo et al. 2025 PLoS ONE
Monitoring the Impact of Confinement on Hyphal Penetration and Fungal Behavior Yi-Syuan…
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Christel et al. 2024 mBio
Catabolic pathway acquisition by rhizosphere bacteria readily enables growth with a root…
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Xie et al. 2024 Plant Journal
AtDGCR14L Contributes to Salt-Stress Tolerance Via Regulating Pre-mRNA Splicing in Arabidopsis Meng…
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Sullivan et al. 2024 Biorxiv
MENTOR: multiplex embedding of networks for team-based omics research Kyle A. Sullivan,…
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Imai et al. 2024 Environmental Microbiology
Complete genome sequence of Luteolibacter sp. strain Populi, a member of phylum…
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Podar et al. 2024 Microbiology Resource Announcements
Complete genome sequence of Luteolibacter sp. strain Populi, a member of phylum…
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Seethepalli et al. 2024 bioRxiv
Divide and conquer: Using RhizoVision Explorer to aggregate data from multiple root…
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Appidi et al. 2024 Phytobiomes
Unraveling bacterial adaptation strategies in the microbiome shaped by the chemical environment…
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LeBoldus et al. 2024 Annual Review Phytopathology
Biotechnology and Genomic Approaches to Mitigating Disease Impacts on Forest Health Jared…
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Rush et al. 2024 mSystems
Fungal Elemental Profiling Unleashed Through Rapid Laser-Induced Breakdown Spectroscopy (LIBS) Tomás A…
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Fracchia et al. 2024 Microbiome
Microbial colonisation rewires the composition and content of poplar root exudates, root…
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Yang et al. 2024 Horticulture Research
A Small Secreted Protein Serves as a Plant-Derived Effector Mediating Symbiosis Between…
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Sword et al. 2024 Scientific Reports
Profiling Expression Strategies for a Type III Polyketide Synthase in a Lysate-Based,…
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A rapid assay for assessing bacterial effects on Arabidopsis thermotolerance Jun Hyung Lee,…
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O’Banion B. S., et al. 2023. Current Biology
Plant myo–inositol transport influences bacterial colonization phenotypes Bridget S. O’Banion, Piet Jones,…
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Vigneaud J., et al. 2023. New Phytologist
DNA hypomethylation of the host tree impairs interaction with mutualistic ectomycorrhizal fungus…
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A Mesorhizobium japonicum quorum sensing circuit that involves three linked genes and an unusual…
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Yao T., et al. 2023. Horticulture Research
CRISPR/Cas9-based gene activation and base editing in Populus Tao Yao, Guoliang Yuan,…
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Dinglasan and Doktycz, 2023. Synthetic Biology
Rewiring Cell-free Metabolic Flux in E. coli Lysates using a Block-Push-Pull Approach Jaime Lorenzo…
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Dinglasan J. L. N., et al. 2023. ACS Synthetic Biology
Investigating and Optimizing the Lysate-Based Expression of Nonribosomal Peptide Synthetases Using a…
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Shrestha, H., 2023. Cells
Lectin Receptor-like Kinase Signaling during Engineered Ectomycorrhiza Colonization Him Shrestha, Tao Yao,…
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DNA hypomethylation of the host tree impairs interaction with mutualistic ectomycorrhizal fungus…
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Mechanism for Utilization of the Populus-Derived Metabolite Salicin by a Pseudomonas—Rahnella Co-Culture…
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Tomaž, Š., et al. 2023. Plant Physiology
A mini-TGA protein modulates gene expression through heterogeneous association with transcription factors…
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Unraveling the Functional Dark Matter Through Global Metagenomics Georgios A. Pavlopoulos, Fotis…
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A Glimpse into the Fungal Metabolomic Abyss: Novel Network Analysis Reveals Relationships…
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Differences in Spore Size and Atmospheric Survival Shape Stark Contrasts in the…
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Quantifying biofilm propagation on chemically modified surfaces Michelle Halsted, Amber Bible, Jennifer…
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The Promises, Challenges, and Opportunities of Omics for Studying the Plant Holobiont…
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Langergren, J. et al. 2022. Phytobiomes Journal
Climatic clustering and longitudinal analysis with impacts on food, bioenergy, and pandemics…
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Marqués-Gálvez, J. E. et al. 2022. PNAS
The establishment of Populus x Laccaria bicolor ectomycorrhiza requires the inactivation of…
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In Situ Detection of Amino Acids from Bacterial Biofilms and Plant Root…
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Hassan MM et. al. 2022. Biotechnology Journal
Precision Genome Editing in Plants Using Gene Targeting and Prime Editing: Existing…
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Relationships between Sphaerulina musiva Infection and the Populus Microbiome and Metabolome Nicholas…
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Mycorrhiza-induced mycypins of Laccaria bicolor are potent protease inhibitors with nematotoxic and…
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Meta-omics-aided isolation of an elusive anaerobic arsenic-methylating soil bacterium Karen Viacava, Jiangtao…
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Phylogenetic conservatism of mycoparasitism and its contribution to pathogen antagonism Edward G.…
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Development of an experimental approach to achieve spatially resolved plan root-associated metaproteomics…
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Expanding the biological role of lipo-chitooligosaccharides and chitooligosaccharides in Laccaria bicolor growth and development…
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Lipo-Chitooligosaccharides Induce Specialized Fungal Metabolite Profiles That Modulate Bacterial Growth Tomás A…
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Bioprospecting Trichoderma: A systematic roadmap to screen genomes and natural products for biocontrol applications…
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Role of reactive oxygen species and hormones in plant response to temperature…
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Characterization of terpene biosynthesis in Melaleuca quinquenervia and ecological consequences of terpene accumulation…
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Simultaneous discovery of positive and negative interactions among root microbiome bacteria using…
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Qiao, Z., et al., 2021. Plant Biotechnology Journal
Towards engineering ectomycorrhization into switchgrass bioenergy crops via a lectin receptor-like kinase…
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Colonization of naive roots from Populus tremula x alba involves successive waves of fungi…
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Fire alters plant microbiome assembly patterns: integrating the plant and soil microbial…
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ALD1 accumulation in Arabidopsis epidermal plastids confers local and non-autonomous disease resistance Shang-Chuan Jiang,…
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Abscisic acid supports colonization of Eucalyptus grandis roots by the mutualistic ectomycorrhizal fungus Pisolithus microcarpus…
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The ectomycorrhizal basidiomycete Laccaria bicolor releases a GH28 polygalacturonase that plays a key role…
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A transcriptomic atlas of the ectomycorrhizal fungus Laccaria bicolor Joske Ruytinx, Shingo Miyauchi,…
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Quantitative resistance linked to late effectors Claire Veneault-Fourrey and Martijn Rep 09-June-2021,…
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Metaproteomics reveal insights into microbial structure, interaction, and dynamic regulation in assembling…
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Heterospecific neighbor plants impact root microbiome diversity and molecular function of root…
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A k-mer based approach for classifying viruses without taxonomy identifies viral associations…
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Identification of a diguanylate cyclase expressed in the presence of plants and…
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Transcriptional regulation of drought response in Arabidopsis and woody plants Tao Yao, Jin Zhang,…
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Targeted Growth Medium Dropouts Promote Aromatic Compound Synthesis in Crude E. coli Cell-Free Systems…
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Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution…
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Molecular remodeling in Populus PdKOR RNAi roots profiled using LC-MS/MS proteomics Paul E. Abraham,…
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A nitrogenase-like enzyme system catalyzes methionine, ethylene, and methane biogenesis Justin A.…
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A carotenoid-deficient mutant of the plant-associated microbe Pantoea sp. YR343 displays an altered membrane…
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Regional Differences in the Structure of Juglans nigra Phytobiome Reflect Geographical Differences in Thousand…
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Reconfiguring plant metabolism for biodegradable plastic production Haiwei Lu, Guoliang Yuan, Steven…
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Isolation, characterization, and pathogenicity of two Pseudomonas syringae pathovars from Populus trichocarpa seeds Patricia MB Saint-Vincent,…
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Alterations in the phenylpropanoid pathway affect poplar ability for ectomycorrhizal colonisation and…
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Mycorrhizal effector PaMiSSP10b alters polyamine biosynthesis in Eucalyptus root cells and promotes root colonization…
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Arabidopsis C-terminal binding protein ANGUSTIFOLIA modulates transcriptional co-regulation of MYB46 and WRKY33…
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Microbiome variation across two hemlock species with hemlock woolly adelgid infestation Nicholas…
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Complete Genome Sequence of Starkeya sp. Strain ORNL1, a Soil Alphaproteobacterium Isolated from the…
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Complete Genome Sequence of the Novel Roseimicrobium sp. Strain ORNL1, a Verrucomicrobium Isolated from…
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Plant hosts modify belowground microbial community response to extreme drought Allison M.…
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Draft genome sequence of Tumebacillus sp. BK434, isolated from the roots of…
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Plant Biosystmes Design for a Carbon-Neutral Bioeconomy Udaya C. Kalluri, Xiaohan Yang,…
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Modulation of plant and fungal gene expression upon Cd exposure and symbiosis…
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P Finder: Genomic and metagenomic annotation of RNAse P RNA gene (rnpB)…
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Impacts of soil microbiome variations on root colonization by fungi and bacteria…
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Host plant genetic control of associated fungal and insect species in a Populus…
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Linking crop traits to transcriptome differences in a progeny population of tetraploid…
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Draft genome of Larkinella sp. BK230 isolated from Populus deltoides roots Dale…
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Desert truffle genomes reveal their reproductive modes and new insights into plant-fungal…
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Can exascale computing and explainable artificial intelligence applied to plant biology deliver…
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The small secreted effector protein MiSSP7.6 of Laccaria bicolor is required for…
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Plasticity of Phymatotrichopsis onmivora infection strategies is dependent on host and nonhost…
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Molecular changes concomitant with vascular system development in mature galls induced by…
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Lectin receptor-like kinases: the sensor and mediator at the plant cell surface…
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The mutualism effector MiSSP7 of Laccaria bicolor alters the interactions between the poplar JAZ6…
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An ectomycorrhizal fungus alters sensitivity to jasmonate, salicylate, gibberellin, and ethylene in…
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Computationally-guided discovery and experimental validation of indole-3-acetic acid synthesis pathways David C.…
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Role of Jasmonates in Beneficial Microbe-Root Interactions Veronica Basso and Claire Veneault-Fourrey…
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Integrated proteomics and lipidomics reveal that the swarming motility of Paenibacillus polymyxa is characterized…
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Complete genome sequence of Terriglobus albidus strain ORNL, an acidobacterium isolated from…
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Relatively rare root endophytic bacteria drive plant resource allocation patterns and tissue…
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Insight into a highly polymorphic endophyte isolated from the roots of the…
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Uehling, J., et al., 2019. Frontiers in Microbiology
Microfluidics and metabolomics reveal symbiotic bacterial-fungal interactions between Mortierella elongata and Burkholderia…
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Laccaria bicolor MiSSP8 is a small-secreted protein decisive for the establishment of…
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Subsidized or stressed? Shifts in freshwater benthic microbial metagenomics along a gradient…
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The ectomycorrhizal fungus Laccaria bicolor produces lipochitooligosaccharides and uses the common symbiosis…
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Plant host-associated mechanisms for microbial selection Piet Jones, Benjamin J. Garcia, Anna…
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Label-free time- and space-resolved exometabolite sampling of growing plant roots through nanoporous…
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Differences in resource use lead to coexistence of seed-transmitted microbial populations G.…
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Pore-scale hydrodynamics influence the spatial evolution of bacterial biofilms in a microfluidic…
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Mediation of plant-mycorrhizal interaction by a lectin receptor-like kinase Wellington Muchero, Olaf…
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Wavelet-based genomic signal processing for centromere identification and hypothesis generation Deborah Weighill,…
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Terpene synthase genes originated from bacteria through horizontal gene transfer contribute to…
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Increasing access to microfluidics for studying fungi and other branched biological structures…
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Multi-phenotype association decomposition: unraveling complex gene-phenotype relationships Deborah Weighill, Piet Jones, Carissa…
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Exploiting the dynamic relationship between peptide separation quality and peptide coisolation in…
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Loss of carotenoids from membranes of Pantoea sp. YR343 results in altered…
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Molecular signalling during the ectomycorrhizal symbiosis Clément Pellegrin, Francis Martin and Claire…
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Parallel accelerated custom correlation coefficient calculations for genomics applications Wayne Joubert, James…
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Data Integration in Poplar: “Omics Layers and Integration Strategies Deborah Weighill, Timothy…
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Fungal-bacterial networks in the Populus rhizobiome are impacted by soil properties and…
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Identification of Populus small RNAs responsive to mutualistic interactions with mycorrhizal fungi,…
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Climate-driven reduction of genetic variation in plant phenology alters soil communities and…
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Isolation and Whole-Genome Sequencing of Environmental Campylobacter Brittni R. Kelley, J. Christopher…
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Regulation of lignin biosynthesis and its role in growth-defense tradeoffs Meng Xie,…
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Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant-pathogen interactions…
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Underground azelaic acid-conferred resistance to Pseudomonas syringae in Arabidopsis Nicolás M. Cecchini,…
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Exploration of the biosynthetic potential of the Populus microbiome Patricia M. Blair,…
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A plant-responsive bacterial-signaling system senses an ethanolamine derivative Bruna G. Coutinho, Emily…
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An aryl-homoserine lactone quorum-sensing signal produced by a dimorphic prosthecate bacterium Lisheng…
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Elucidating the potential of crude cell extracts for producing pyruvate from glucose…
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Methanogenic Archaea dominate mature heartwood habitats of Eastern Cottonwood (Populus deltoides) Daniel…
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Genome-wide association studies and expression-based quantitative trait loci analyses reveal roles of…
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The ectomycorrhizal basidiomycete Laccaria bicolor releases a secreted β-1,4 endocellulase that plays a…
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