Nash et al. 2025 <i>BioRxiv</i>

2025
- Nash et al. 2025 BioRxiv
  
  Time-series RNA metabarcoding of the active Populus tremuloides root microbiome reveals hidden temporal…
- Lu et al. 2025 Scientific Reports
  
  Poplar Transformation with Variable Explant Sources to Maximize Transformation Efficiency Haiwei Lu,…
- Tavis et al. 2025 Analytical Chemistry
  
  LipoCLEAN: A Machine Learning Filter to Improve Untargeted Lipid Identification Confidence Steven…
2024
- Beattie et al. 2024 Phytopathology
  
  From microbes to microbiomes: Applications for plant health and sustainable agriculture Gwyn…
- Fracchia et al. 2024 bioRxiv
  
  Microbe tree metabolite interactions in the soil – phyllosphere continuum of poplar…
- Plett et al. 2024 The Mycota
  
  Masters of Manipulation: How Our Molecular Understanding of Model Symbiotic Fungi and…
- Wang et al. 2024 mSystems
  
  Formation of a constructed microbial community in a nutrient-rich environment indicates bacterial…
- Simon et al. 2024 New Phytologist
  
  Genetic underpinnings of arthropod community distributions in Populus trichocarpa Sandra J. Simon, Anna…
- Mudbhari et al. 2023 bioRxiv
  
  Decoding the chemical language of Suillus fungi: genome mining and untargeted metabolomics…
- Lash et al. 2024 Functional Ecology
  
  Ant handling changes myrmecochore seed coat microbiomes and alters diversity of seed-borne…
- Argiroff et al. 2024 mSystems
  
  Seasonality and longer-term development generate temporal dynamics in the Populus microbiome William A. Argiroff, Alyssa…
- Marqués-Gálvez J.E. et al. 2024 New Phytologist
  
  Populus MYC2 orchestrates root transcriptional reprogramming of defence pathway to impair Laccaria bicolor ectomycorrhizal development…
- Guo et al. 2025 PLoS ONE
  
  Monitoring the Impact of Confinement on Hyphal Penetration and Fungal Behavior Yi-Syuan…
- Christel et al. 2024 mBio
  
  Catabolic pathway acquisition by rhizosphere bacteria readily enables growth with a root…
- Xie et al. 2024 Plant Journal
  
  AtDGCR14L Contributes to Salt-Stress Tolerance Via Regulating Pre-mRNA Splicing in Arabidopsis Meng…
- Sullivan et al. 2024 Biorxiv
  
  MENTOR: multiplex embedding of networks for team-based omics research Kyle A. Sullivan,…
- Imai et al. 2024 Environmental Microbiology
  
  Complete genome sequence of Luteolibacter sp. strain Populi, a member of phylum…
- Podar et al. 2024 Microbiology Resource Announcements
  
  Complete genome sequence of Luteolibacter sp. strain Populi, a member of phylum…
- Seethepalli et al. 2024 New Phytologist
  
  Divide and conquer: Using RhizoVision Explorer to aggregate data from multiple root…
- Appidi et al. 2024 Phytobiomes
  
  Unraveling bacterial adaptation strategies in the microbiome shaped by the chemical environment…
- LeBoldus et al. 2024 Annual Review Phytopathology
  
  Biotechnology and Genomic Approaches to Mitigating Disease Impacts on Forest Health Jared…
- Rush et al. 2024 mSystems
  
  Fungal Elemental Profiling Unleashed Through Rapid Laser-Induced Breakdown Spectroscopy (LIBS) Tomás A…
- Fracchia et al. 2024 Microbiome
  
  Microbial colonisation rewires the composition and content of poplar root exudates, root…
- Yang et al. 2024 Horticulture Research
  
  A Small Secreted Protein Serves as a Plant-Derived Effector Mediating Symbiosis Between…
- Sword et al. 2024 Scientific Reports
  
  Profiling Expression Strategies for a Type III Polyketide Synthase in a Lysate-Based,…
2023
- Lee J. H. et al. 2023. Plant Methods
  
  A rapid assay for assessing bacterial effects on Arabidopsis thermotolerance Jun Hyung Lee,…
- O’Banion B. S., et al. 2023. Current Biology
  
  Plant myo–inositol transport influences bacterial colonization phenotypes Bridget S. O’Banion, Piet Jones,…
- Vigneaud J., et al. 2023. New Phytologist
  
  DNA hypomethylation of the host tree impairs interaction with mutualistic ectomycorrhizal fungus…
- Suo Z., et al. 2023. mBio
  
  A Mesorhizobium japonicum quorum sensing circuit that involves three linked genes and an unusual…
- Yao T., et al. 2023. Horticulture Research
  
  CRISPR/Cas9-based gene activation and base editing in Populus Tao Yao, Guoliang Yuan,…
- Dinglasan and Doktycz, 2023. Synthetic Biology
  
  Rewiring Cell-free Metabolic Flux in E. coli Lysates using a Block-Push-Pull Approach Jaime Lorenzo…
- Dinglasan J. L. N., et al. 2023. ACS Synthetic Biology
  
  Investigating and Optimizing the Lysate-Based Expression of Nonribosomal Peptide Synthetases Using a…
- Shrestha, H., 2023. Cells
  
  Lectin Receptor-like Kinase Signaling during Engineered Ectomycorrhiza Colonization Him Shrestha, Tao Yao,…
- Vigneaud, J., et al. 2023. New Phytologist
  
  DNA hypomethylation of the host tree impairs interaction with mutualistic ectomycorrhizal fungus…
- Dahal, S., 2023. Metabolites
  
  Mechanism for Utilization of the Populus-Derived Metabolite Salicin by a Pseudomonas—Rahnella Co-Culture…
- Tomaž, Š., et al. 2023. Plant Physiology
  
  A mini-TGA protein modulates gene expression through heterogeneous association with transcription factors…
- Pavlopoulos G. A. 2023. Nature
  
  Unraveling the Functional Dark Matter Through Global Metagenomics Georgios A. Pavlopoulos, Fotis…
- Gopalakrishnan Meena M. et al. 2023. PNAS Nexus
  
  A Glimpse into the Fungal Metabolomic Abyss: Novel Network Analysis Reveals Relationships…
- Golan J. J. et al. 2023. Fungal Ecology
  
  Differences in Spore Size and Atmospheric Survival Shape Stark Contrasts in the…
- de Freitas Pereira M. et al. 2023. The Plant Journal
  
  Ectomycorrhizal symbiosis prepares its host locally and systemically for abiotic cue signaling…
- Cope, K. R., et al. 2023 Comput. Struct. Biotechnol. J.
  
  Exploring the role of plant lysin motif receptor-like kinases in regulating plant-microbe…
2022
- Halsted, M. C., et al. 2022. Biofilm
  
  Quantifying biofilm propagation on chemically modified surfaces Michelle Halsted, Amber Bible, Jennifer…
- Carper, D. L., et al. 2022. Microorganisms
  
  The Promises, Challenges, and Opportunities of Omics for Studying the Plant Holobiont…
- Langergren, J. et al. 2022. Phytobiomes Journal
  
  Climatic clustering and longitudinal analysis with impacts on food, bioenergy, and pandemics…
- Marqués-Gálvez, J. E. et al. 2022. PNAS
  
  The establishment of Populus x Laccaria bicolor ectomycorrhiza requires the inactivation of…
- Walton et al. 2022. J. Am. Soc. Mass Spectrom.
  
  In Situ Detection of Amino Acids from Bacterial Biofilms and Plant Root…
- Hassan MM et. al. 2022. Biotechnology Journal
  
  Precision Genome Editing in Plants Using Gene Targeting and Prime Editing: Existing…
- Dove, NC et al. 2022. mSystems
  
  Relationships between Sphaerulina musiva Infection and the Populus Microbiome and Metabolome Nicholas…
- Veneault-Fourrey, C. et al. 2022. Microbial Cross-talk in the Rhizosphere. Rhizosphere Biology.
  
  Ectomycorrhizal Symbiosis: From Genomics to Trans-Kingdom Molecular Communication and Signaling. José Eduardo…
- Plett, J et al. 2022. Environmental Microbiology
  
  Mycorrhiza-induced mycypins of Laccaria bicolor are potent protease inhibitors with nematotoxic and…
- Viacava, K. et al. 2022. ISME Journal
  
  Meta-omics-aided isolation of an elusive anaerobic arsenic-methylating soil bacterium Karen Viacava, Jiangtao…
- Hu, Xiao-Li et al. 2022. Horticulture Research
  
  Diversity and conservation of plant small secreted proteins associated with arbuscular mycorrhizal…
- Barge, E.G. et al., 2022. Molecular Ecology
  
  Phylogenetic conservatism of mycoparasitism and its contribution to pathogen antagonism Edward G.…
- Appidi, MR et al., 2022. Molecular Plant-Microbe Interactions
  
  Development of an experimental approach to achieve spatially resolved plan root-associated metaproteomics…
- Aufrecht, JA et al., 2022. Lab on A Chip
  
  Hotspots of root exuded amino acids are created within a rhizosphere-on-a-chip Jayde…
- Villalobos Solis, MI et al., 2022. Frontiers in Fungal Biology
  
  Expanding the biological role of lipo-chitooligosaccharides and chitooligosaccharides in Laccaria bicolor growth and development…
- Rush, T. A., et al. 2022. mSystems
  
  Lipo-Chitooligosaccharides Induce Specialized Fungal Metabolite Profiles That Modulate Bacterial Growth Tomás A…
- Meslier, V., et al. 2022. Scientific Data
  
  Benchmarking second and third-generation sequencing platforms for microbial metagenomics Victoria Meslier, Benoit…
- Yan, L., et al. 2022. Biodesign Research
  
  Biological and Molecular Components for Genetically Engineering Biosensors in Plants Liu, Yang,…
2021
- Wolf, M. et al., 2021 IEEE International Conference on Cluster Computing
  
  Reusability First: Toward FAIR Workflows Matthew Wolf, Jeremy Logan, Kshitij Mehta, Daniel…
- Dinglasan, JLN et al., 2021. JoVE
  
  Liquid chromatography coupled to refractive index of mass spectrometric detection for metabolite…
- Rush, T. A. et al., 2021. Frontiers in Fungal Biology
  
  Bioprospecting Trichoderma: A systematic roadmap to screen genomes and natural products for biocontrol applications…
- Devireddy, A. R., 2021. International Journal of Molecular Sciences
  
  Role of reactive oxygen species and hormones in plant response to temperature…
- Hsieh, J-F et al., 2021. Plant-Environment Interactions
  
  Characterization of terpene biosynthesis in Melaleuca quinquenervia and ecological consequences of terpene accumulation…
- Barua, N. et al. 2021. Frontiers in Microbiology
  
  Simultaneous discovery of positive and negative interactions among root microbiome bacteria using…
- Qiao, Z., et al., 2021. Plant Biotechnology Journal
  
  Towards engineering ectomycorrhization into switchgrass bioenergy crops via a lectin receptor-like kinase…
- Ware, I. M., et al., 2021. Communications Biology
  
  Climate-driven divergence in plant-microbiome interactions generates range-wide variation in bud break phenology…
- Hu, X-L. et al., 2021. Horticulture Research
  
  Advances and perspectives in discovery and functional analysis of small secreted proteins…
- Carper, D.L., et al., 2021. MSystems
  
  Cultivating the Bacterial Microbiota of Populus Roots Dana L. Carper, David J. Weston, Aditya…
- Wang, J., et al., 2021. Computational and Structural Biotechnology J.
  
  Formation, characterization and modeling of emergent synthetic microbial communities Jia Wang, Dana…
- Dove, N. C., et al., 2021. mSphere
  
  Assembly of the Populus microbiome is temporally dynamic and determined by selective…
- Drott, M., et al., 2021. PNAS
  
  Microevolution in the pansecondary metabolome of Aspergillis flavus and its potential macroevolutionary implications for…
- Fracchia, F. et al., 2021. Applied and Environmental Microbiology
  
  Colonization of naive roots from Populus tremula x alba involves successive waves of fungi…
- Pavicic, M., et al., 2021. Plants (Basel)
  
  Image-Based Methods to Score Fungal Pathogen Symptom Progression and Severity in Excised…
- Vélez, J., et al. 2021. PLoS ONE
  
  Phylogenetic diversity of 200+ isolates of the ectomycorrhizal fungus Cenococcum geophilum associated…
- Lenz, R et al. 2022. Phytopathology
  
  Metabolic patterns in Septoria canker resistant and susceptible Populus trichocarpa genotypes 24 hours post-inoculation…
- Luo, S. et al., 2021. PNAS
  
  Structural basis for a bacterial Pip system plant effector recognition protein Shukun…
- Cregger, M. A. et al., Phytobiomes Journal
  
  Plant-Microbe Interactions: From Genes to Ecosystems Using Populus as a Model System Melissa A.…
- Dove, N. et al., 2021. New Phytologist
  
  Fire alters plant microbiome assembly patterns: integrating the plant and soil microbial…
- Jiang, S-C. et al., 2021. Journal of Experimental Botany
  
  ALD1 accumulation in Arabidopsis epidermal plastids confers local and non-autonomous disease resistance Shang-Chuan Jiang,…
- Garcia, D. C. et al., 2021. Metabolic Engineering Communications
  
  A lysate proteome engineering strategy for enhancing cell-free metabolite production David C.…
- Sawyer, C., et al. 2021. Fungal Genomics & Biology
  
  Small RNAs at the interface of the Plant-Fungal Interactions Cole R. Sawyer…
- Hill, RA et al., 2021. New Phytologist
  
  Abscisic acid supports colonization of Eucalyptus grandis roots by the mutualistic ectomycorrhizal fungus Pisolithus microcarpus…
- Zhang, F et al., 2021. New Phytologist
  
  The ectomycorrhizal basidiomycete Laccaria bicolor releases a GH28 polygalacturonase that plays a key role…
- Ruytinx, J et al., 2021. Microorganisms
  
  A transcriptomic atlas of the ectomycorrhizal fungus Laccaria bicolor Joske Ruytinx, Shingo Miyauchi,…
- Veneault-Fourrey, C and Rep M. 2021. New Phytologist
  
  Quantitative resistance linked to late effectors Claire Veneault-Fourrey and Martijn Rep 09-June-2021,…
- Looney, B et al., 2021. New Phytologist
  
  Evolutionary transition to the ectomycorrhizal habit in the genomes of a hyperdiverse…
- Shrestha, HK et al., 2021. BMC Microbiology
  
  Metaproteomics reveal insights into microbial structure, interaction, and dynamic regulation in assembling…
- Liao, H-L et al., 2021. Frontiers in Microbiology
  
  Heterospecific neighbor plants impact root microbiome diversity and molecular function of root…
- Garcia, BJ et al., 2021. Computational and Structural Biotechnology Journal
  
  A k-mer based approach for classifying viruses without taxonomy identifies viral associations…
- Yates T., et al., 2021. Genome Biology and Evolution
  
  The ancient Salicoid genome duplication event: A platform for reconstruction of de novo gene…
- Hassan, MM et al., 2021. Trends in Plant Sciences
  
  Construct design for CRISPR/Cas-based genome editing in plants Md Mahmudul Hassan, Yingxiao…
- Bible A. N. et al. 2021. PLoS ONE
  
  Identification of a diguanylate cyclase expressed in the presence of plants and…
- Yao, T., et al. 2021. Frontiers in Plant Sciences
  
  Transcriptional regulation of drought response in Arabidopsis and woody plants Tao Yao, Jin Zhang,…
2020
- Jones, P., et al. 2020., Metabolic Engineering Lab Protocol Series
  
  Network modeling of complex data sets Piet Jones, Deborah Weighill, Manesh Shah,…
- Lawrence, T. J., et al. 2020. Bioinformatics
  
  amPEPpy 1.0: A portable and accurate antimicrobial peptide prediction tool Travis J.…
- Mohr, B. et al., 2020. ACS Synthetic Biology
  
  Targeted Growth Medium Dropouts Promote Aromatic Compound Synthesis in Crude E. coli Cell-Free Systems…
- Miyauchi, S., et al. 2020. Nature Communications
  
  Large-scale genome sequencing of mycorrhizal fungi provides insights into the early evolution…
- Abraham, P. E. et al., 2020. Proteomics
  
  Molecular remodeling in Populus PdKOR RNAi roots profiled using LC-MS/MS proteomics Paul E. Abraham,…
- North, J. A., et al. 2020. Science
  
  A nitrogenase-like enzyme system catalyzes methionine, ethylene, and methane biogenesis Justin A.…
- Vijaya Kumar, S., et al. 2020. Scientific Reports
  
  A carotenoid-deficient mutant of the plant-associated microbe Pantoea sp. YR343 displays an altered membrane…
- Onufrak, A. J., et al. 2020. Phytobiomes Journal
  
  Regional Differences in the Structure of Juglans nigra Phytobiome Reflect Geographical Differences in Thousand…
- Lu, H., et al. 2020. BioDesign Research
  
  Reconfiguring plant metabolism for biodegradable plastic production Haiwei Lu, Guoliang Yuan, Steven…
- Saint-Vincent, P. M. B., et al. 2020. Microorganisms
  
  Isolation, characterization, and pathogenicity of two Pseudomonas syringae pathovars from Populus trichocarpa seeds Patricia MB Saint-Vincent,…
- Behr, M., et al. 2020. Mycorrhiza
  
  Alterations in the phenylpropanoid pathway affect poplar ability for ectomycorrhizal colonisation and…
- Plett, J. M., et al. 2020. New Phytologist
  
  Mycorrhizal effector PaMiSSP10b alters polyamine biosynthesis in Eucalyptus root cells and promotes root colonization…
- Xie, M., et al. 2020. New Phytologist
  
  Arabidopsis C-terminal binding protein ANGUSTIFOLIA modulates transcriptional co-regulation of MYB46 and WRKY33…
- Rush, T., et al. 2020. Nature Communications
  
  Lipo-chitooligosaccharides as regulatory signals of fungal growth and development Tomás Rush, Virginie…
- Yang, X. et al., 2020. BioDesign Research
  
  Plant Biosystems Design Research Roadmap 1.0 Xiaohan Yang, June I. Medford, Kasey…
- Nash, J., et al. 2020. Plant and Soil
  
  Ectomycorrhizal fungal diversity interacts with soil nutrients to predict plant growth despite…
- Hassan, Md. M., et al. 2020. BioDesign Research
  
  Prime Editing Technology and Its Prospects for Future Applications in Plant Biology…
- Søndreli, K.L. et al. 2020. Plant Disease
  
  An outbreak of Septoria cancer caused by Sphaerulina musciva on Populus trichocarpa…
- Dove, N., et al., 2020. Frontiers in Microbiology
  
  Microbiome variation across two hemlock species with hemlock woolly adelgid infestation Nicholas…
- Villalobos Solis, M. I., et al., 2020. MPMI
  
  A viable new strategy for the discovery of peptide proteolytic cleavage products…
- Podar, M., et al., 2020. Microbiology Resource Announcements
  
  Complete Genome Sequence of Starkeya sp. Strain ORNL1, a Soil Alphaproteobacterium Isolated from the…
- Podar, M., et al., 2020. Microbiology Resource Announcements
  
  Complete Genome Sequence of the Novel Roseimicrobium sp. Strain ORNL1, a Verrucomicrobium Isolated from…
- Veach, A. M., et al., 2020. mSystems
  
  Plant hosts modify belowground microbial community response to extreme drought Allison M.…
- Carper, D., et al., 2020. Microbiology Resource Announcements
  
  Draft genome sequence of Tumebacillus sp. BK434, isolated from the roots of…
- Khalid, M., et al., 2020. Wiley’s Imaging and Microscopy Journal
  
  Nano-enabled chemical imaging Muneeba Khalid, Mitchel J. Doktycz, and Scott T. Retterer…
- Kalluri, U. C., et al., 2020. AAAS BioDesign Journal
  
  Plant Biosystmes Design for a Carbon-Neutral Bioeconomy Udaya C. Kalluri, Xiaohan Yang,…
- Casarrubia, S., et al., 2020. Frontiers in Microbiology
  
  Modulation of plant and fungal gene expression upon Cd exposure and symbiosis…
- Ellis, J. C. 2020. BMC Genomics
  
  P Finder: Genomic and metagenomic annotation of RNAse P RNA gene (rnpB)…
- Mangeot-Peter, L. et al., 2020. Phytobiomes Journal
  
  Impacts of soil microbiome variations on root colonization by fungi and bacteria…
- Simon, S. J., et al. 2020. Ecology and Evolution
  
  Host plant genetic control of associated fungal and insect species in a Populus…
- Alexandersson, E., et al. 2020. BMC Plant Biology
  
  Linking crop traits to transcriptome differences in a progeny population of tetraploid…
- Pelletier, D. A. et al. 2020. Microbiology Resource Announcements
  
  Draft genome of Larkinella sp. BK230 isolated from Populus deltoides roots Dale…
- Marqués-Gálvez JE et al., 2020. New Phytologist
  
  Desert truffle genomes reveal their reproductive modes and new insights into plant-fungal…
- Streich J. et al., 2020. Current Opinion in Biotechnology
  
  Can exascale computing and explainable artificial intelligence applied to plant biology deliver…
- Kang, H., et al. 2020. Environmental Microbiology
  
  The small secreted effector protein MiSSP7.6 of Laccaria bicolor is required for…
- Kankanala, P. et al. 2020. Plant, Cell & Environment
  
  Plasticity of Phymatotrichopsis onmivora infection strategies is dependent on host and nonhost…
- Baldacci-Cresp, F. et al. 2020. International Journal of Molecular Sciences
  
  Molecular changes concomitant with vascular system development in mature galls induced by…
- Sun, Y., et al. 2020. Frontiers in Plant Sciences
  
  Lectin receptor-like kinases: the sensor and mediator at the plant cell surface…
- Daguerre, Y., et al. 2020. Scientific Reports
  
  The mutualism effector MiSSP7 of Laccaria bicolor alters the interactions between the poplar JAZ6…
- Carper, D. L. et al., 2020. PeerJ
  
  DISCo-microbe: Design of an identifiable synthetic community of microbes Dana L. Carper,…
2019
- Basso, V. et al., 2019. Plant, Cell & Environment
  
  An ectomycorrhizal fungus alters sensitivity to jasmonate, salicylate, gibberellin, and ethylene in…
- Garcia, D. C., et al., 2019. ACS Chemical Biology
  
  Computationally-guided discovery and experimental validation of indole-3-acetic acid synthesis pathways David C.…
- Basso, V., et al. 2019. Methods of Molecular Biology
  
  Role of Jasmonates in Beneficial Microbe-Root Interactions Veronica Basso and Claire Veneault-Fourrey…
- Poudel, S., et al., 2019. Frontiers in Microbiology
  
  Integrated proteomics and lipidomics reveal that the swarming motility of Paenibacillus polymyxa is characterized…
- Podar, M., et al., 2019. ASM Microbiology Resource Announcements
  
  Complete genome sequence of Terriglobus albidus strain ORNL, an acidobacterium isolated from…
- Henning, J. A., et al., 2019. American Journal of Botany
  
  Relatively rare root endophytic bacteria drive plant resource allocation patterns and tissue…
- Yuan, Z., et al., 2019. Fungal Biology
  
  Insight into a highly polymorphic endophyte isolated from the roots of the…
- Uehling, J., et al., 2019. Frontiers in Microbiology
  
  Microfluidics and metabolomics reveal symbiotic bacterial-fungal interactions between Mortierella elongata and Burkholderia…
- Pellegrin, C. et al., 2019. Environmental Microbiology
  
  Laccaria bicolor MiSSP8 is a small-secreted protein decisive for the establishment of…
- Bier, R. L., et al. 2019. Limnology and Oceanography
  
  Subsidized or stressed? Shifts in freshwater benthic microbial metagenomics along a gradient…
- Labbé, J. et al., 2019. Plant Cell
  
  The ectomycorrhizal fungus Laccaria bicolor produces lipochitooligosaccharides and uses the common symbiosis…
- Jones, P. et al., 2019. Frontiers in Plant Sciences
  
  Plant host-associated mechanisms for microbial selection Piet Jones, Benjamin J. Garcia, Anna…
- Patabadige, D.E. et al., 2019. Scientific Reports
  
  Label-free time- and space-resolved exometabolite sampling of growing plant roots through nanoporous…
- Torres-Cortés et al., 2019. Scientific Reports
  
  Differences in resource use lead to coexistence of seed-transmitted microbial populations G.…
- Aufrecht, J., et al. 2019. PLoS ONE
  
  Pore-scale hydrodynamics influence the spatial evolution of bacterial biofilms in a microfluidic…
- Labbé, J., et al., 2019. Nature Plants
  
  Mediation of plant-mycorrhizal interaction by a lectin receptor-like kinase Wellington Muchero, Olaf…
- Weighill, D. et al., 2019. Frontiers in Genetics
  
  Wavelet-based genomic signal processing for centromere identification and hypothesis generation Deborah Weighill,…
- Jia et al., 2019. Scientific Reports
  
  Terpene synthase genes originated from bacteria through horizontal gene transfer contribute to…
- Millet, L. J., et al. 2019. Fungal Biology and Biotechnology
  
  Increasing access to microfluidics for studying fungi and other branched biological structures…
- Weighill, D. et al., 2019. Frontiers in Genetics
  
  Multi-phenotype association decomposition: unraveling complex gene-phenotype relationships Deborah Weighill, Piet Jones, Carissa…
- Villalobos Solis, M. et al., 2019. Analytical Chemistry
  
  Exploiting the dynamic relationship between peptide separation quality and peptide coisolation in…
- Vijaya Kumar, S. et al., 2019. BBA-Biomembranes
  
  Loss of carotenoids from membranes of Pantoea sp. YR343 results in altered…
- Veach, A. M., et al. 2019. Microbiome
  
  Rhizosphere microbiomes diverge among Populus trichocarpa plant-host genotypes and chemotypes, but it…
- Pellegrin, C., et al. 2019. The Mycota vol. VIII
  
  Molecular signalling during the ectomycorrhizal symbiosis Clément Pellegrin, Francis Martin and Claire…
- Joubert, W., et al. 2019. Parallel Computing
  
  Parallel accelerated custom correlation coefficient calculations for genomics applications Wayne Joubert, James…
- Weighill, D. et al., 2019. Frontiers in Genetics
  
  Data Integration in Poplar: “Omics Layers and Integration Strategies Deborah Weighill, Timothy…
- Cliff, A., et al. 2019. Genes
  
  A high-performance computing implementation of iterative random forest for the creation of…
- Bonito, G. M., et al., 2019. Frontiers in Microbiology
  
  Fungal-bacterial networks in the Populus rhizobiome are impacted by soil properties and…
- Mewalal, R. et al., 2019. Frontiers in Microbiology
  
  Identification of Populus small RNAs responsive to mutualistic interactions with mycorrhizal fungi,…
- Liao, H-L., et al., 2019. MPMI
  
  Fungal endophytes of Populus trichocarpa alter host phenotype, gene expression and rhizobiome…
- Ware, I. M., et al., 2019. Global Change Biology
  
  Climate-driven reduction of genetic variation in plant phenology alters soil communities and…
- Li, Z. et al., 2019. Frontiers in Microbiology
  
  Genome-resolved proteomic stable isotope probing of soil microbial communities using 13CO2 and…
2018
- Kelley, B. R., et al., 2018. Current Protocols in Microbiology
  
  Isolation and Whole-Genome Sequencing of Environmental Campylobacter Brittni R. Kelley, J. Christopher…
- Rogers, T. J., et al., 2018. Ecosphere
  
  Exploring variation in phyllosphere microbial communities across four hemlock species Timothy J.…
- Xie, M. et al., 2018. Frontiers in Plant Science
  
  Regulation of lignin biosynthesis and its role in growth-defense tradeoffs Meng Xie,…
- Muchero, W. et al., 2018. PNAS
  
  Association mapping, transcriptomics, and transient expression identify candidate genes mediating plant-pathogen interactions…
- Cecchini et al., 2018. MPMI
  
  Underground azelaic acid-conferred resistance to Pseudomonas syringae in Arabidopsis Nicolás M. Cecchini,…
- Blair, P. et al., 2018. mSystems
  
  Exploration of the biosynthetic potential of the Populus microbiome Patricia M. Blair,…
- Coutinho, B. et al., 2018. PNAS
  
  A plant-responsive bacterial-signaling system senses an ethanolamine derivative Bruna G. Coutinho, Emily…
- Liao, L. et al., 2018. PNAS
  
  An aryl-homoserine lactone quorum-sensing signal produced by a dimorphic prosthecate bacterium Lisheng…
- Garcia, D. et al., 2018. Synthetic Biology
  
  Elucidating the potential of crude cell extracts for producing pyruvate from glucose…
- Yip, D. et al., 2018. New Phytologist
  
  Methanogenic Archaea dominate mature heartwood habitats of Eastern Cottonwood (Populus deltoides) Daniel…
- Zhang, J. et al., 2018. New Phytologist
  
  Genome-wide association studies and expression-based quantitative trait loci analyses reveal roles of…
- Bryan, A. et al., 2018. G3
  
  A variable polyglutamine repeat affects sub cellular localization and regulatory activity of…
- Aime, M. C. et al., 2018. Mycologia
  
  Two new endophytic Atractiellomycetes, Atractidochium hillarie and Proceropycnis hameedii Catherine M. Aime,…
- Veach, A. et al., 2018. Plant and Soil
  
  Modification of plant cell wall chemistry impacts plant metabolome and bacterial community…
- Zhang, F. et al., 2018. New Phytologist
  
  The ectomycorrhizal basidiomycete Laccaria bicolor releases a secreted β-1,4 endocellulase that plays a…
- Joubert, W. et al., 2018. Parallel Computing
  
  Parallel Accelerated Vector Similarity Calculations for Genomics Applications Wayne Joubert, James Nance,…
- Miquel Guennoc, C. et al., 2018. FEMS Microbiology Ecology
  
  Bacterial biofilm formation on the hyphae of ectomycorrhizal fungi: a widespread ability…
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  Nano-enabled approaches to chemical imaging in biosystems Scott Retterer, Jennifer L. Morrell-Falvey…
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- Karpinets et al., 2010. Database
  
  Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a…
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  Biosynthesis and emission of insect-induced methyl salicylate and methyl benzoate from rice.

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