Publications

MENTOR: multiplex embedding of networks for team-based…

Complete genome sequence of Luteolibacter sp. strain…

Complete genome sequence of Luteolibacter sp. strain…

Divide and conquer: Using RhizoVision Explorer to…

Unraveling bacterial adaptation strategies in the microbiome…

Biotechnology and Genomic Approaches to Mitigating Disease…

Fungal Elemental Profiling Unleashed Through Rapid Laser-Induced…

Microbial colonisation rewires the composition and content…

A Small Secreted Protein Serves as a…

Profiling Expression Strategies for a Type III…

From microbes to microbiomes: Applications for plant…

Microbe tree metabolite interactions in the soil…

Masters of Manipulation: How Our Molecular Understanding…

Formation of a constructed microbial community in…

Genetic underpinnings of arthropod community distributions in Populus…

Decoding the chemical language of Suillus fungi:…

Ant handling changes myrmecochore seed coat microbiomes…

Seasonality and longer-term development generate temporal dynamics…

Populus MYC2 orchestrates root transcriptional reprogramming of defence…

A rapid assay for assessing bacterial effects…

Plant myo–inositol transport influences bacterial colonization phenotypes…

DNA hypomethylation of the host tree impairs…

A Mesorhizobium japonicum quorum sensing circuit that involves three…

CRISPR/Cas9-based gene activation and base editing in…

Rewiring Cell-free Metabolic Flux in E. coli Lysates using…

Investigating and Optimizing the Lysate-Based Expression of…

Lectin Receptor-like Kinase Signaling during Engineered Ectomycorrhiza…

DNA hypomethylation of the host tree impairs…

Mechanism for Utilization of the Populus-Derived Metabolite…

A mini-TGA protein modulates gene expression through…

Unraveling the Functional Dark Matter Through Global…

A Glimpse into the Fungal Metabolomic Abyss:…

Differences in Spore Size and Atmospheric Survival…

Ectomycorrhizal symbiosis prepares its host locally and…

Exploring the role of plant lysin motif…

Quantifying biofilm propagation on chemically modified surfaces…

The Promises, Challenges, and Opportunities of Omics…

Climatic clustering and longitudinal analysis with impacts…

The establishment of Populus x Laccaria bicolor…

In Situ Detection of Amino Acids from…

Precision Genome Editing in Plants Using Gene…

Relationships between Sphaerulina musiva Infection and the…

Ectomycorrhizal Symbiosis: From Genomics to Trans-Kingdom Molecular…

Mycorrhiza-induced mycypins of Laccaria bicolor are potent…

Meta-omics-aided isolation of an elusive anaerobic arsenic-methylating…

Diversity and conservation of plant small secreted…

Phylogenetic conservatism of mycoparasitism and its contribution…

Development of an experimental approach to achieve…

Hotspots of root exuded amino acids are…

Expanding the biological role of lipo-chitooligosaccharides and…

Lipo-Chitooligosaccharides Induce Specialized Fungal Metabolite Profiles That…

Benchmarking second and third-generation sequencing platforms for…

Biological and Molecular Components for Genetically Engineering…

Reusability First: Toward FAIR Workflows Matthew Wolf,…

Liquid chromatography coupled to refractive index of…

Bioprospecting Trichoderma: A systematic roadmap to screen genomes and…

Role of reactive oxygen species and hormones…

Characterization of terpene biosynthesis in Melaleuca quinquenervia and…

Simultaneous discovery of positive and negative interactions…

Towards engineering ectomycorrhization into switchgrass bioenergy crops…

Climate-driven divergence in plant-microbiome interactions generates range-wide…

Advances and perspectives in discovery and functional…

Cultivating the Bacterial Microbiota of Populus Roots Dana L.…

Formation, characterization and modeling of emergent synthetic…

Assembly of the Populus microbiome is temporally…

Microevolution in the pansecondary metabolome of Aspergillis flavus and…

Colonization of naive roots from Populus tremula x alba…

Image-Based Methods to Score Fungal Pathogen Symptom…

Phylogenetic diversity of 200+ isolates of the…

Metabolic patterns in Septoria canker resistant and…

Structural basis for a bacterial Pip system…

Plant-Microbe Interactions: From Genes to Ecosystems Using Populus as…

Fire alters plant microbiome assembly patterns: integrating…

ALD1 accumulation in Arabidopsis epidermal plastids confers local and…

A lysate proteome engineering strategy for enhancing…

Small RNAs at the interface of the…

Abscisic acid supports colonization of Eucalyptus grandis roots by…

The ectomycorrhizal basidiomycete Laccaria bicolor releases a GH28 polygalacturonase…

A transcriptomic atlas of the ectomycorrhizal fungus Laccaria…

Quantitative resistance linked to late effectors Claire…

Evolutionary transition to the ectomycorrhizal habit in…

Metaproteomics reveal insights into microbial structure, interaction,…

Heterospecific neighbor plants impact root microbiome diversity…

A k-mer based approach for classifying viruses…

The ancient Salicoid genome duplication event:  A…

Construct design for CRISPR/Cas-based genome editing in…

Identification of a diguanylate cyclase expressed in…

Transcriptional regulation of drought response in Arabidopsis and woody…

Network modeling of complex data sets Piet…

amPEPpy 1.0:  A portable and accurate antimicrobial…

Targeted Growth Medium Dropouts Promote Aromatic Compound…

Large-scale genome sequencing of mycorrhizal fungi provides…

Molecular remodeling in Populus PdKOR RNAi roots profiled using…

A nitrogenase-like enzyme system catalyzes methionine, ethylene,…

A carotenoid-deficient mutant of the plant-associated microbe Pantoea sp.…

Regional Differences in the Structure of Juglans nigra Phytobiome…

Reconfiguring plant metabolism for biodegradable plastic production…

Isolation, characterization, and pathogenicity of two Pseudomonas syringae pathovars…

Alterations in the phenylpropanoid pathway affect poplar…

Mycorrhizal effector PaMiSSP10b alters polyamine biosynthesis in Eucalyptus root…

Arabidopsis C-terminal binding protein ANGUSTIFOLIA modulates transcriptional…

Lipo-chitooligosaccharides as regulatory signals of fungal growth…

Plant Biosystems Design Research Roadmap 1.0 Xiaohan…

Ectomycorrhizal fungal diversity interacts with soil nutrients…

Prime Editing Technology and Its Prospects for…

An outbreak of Septoria cancer caused by…

Microbiome variation across two hemlock species with…

A viable new strategy for the discovery…

Complete Genome Sequence of Starkeya sp. Strain ORNL1, a…

Complete Genome Sequence of the Novel Roseimicrobium sp. Strain…

Plant hosts modify belowground microbial community response…

Draft genome sequence of Tumebacillus sp. BK434,…

Nano-enabled chemical imaging Muneeba Khalid, Mitchel J.…

Plant Biosystmes Design for a Carbon-Neutral Bioeconomy…

Modulation of plant and fungal gene expression…

P Finder:  Genomic and metagenomic annotation of…

Impacts of soil microbiome variations on root…

Host plant genetic control of associated fungal…

Linking crop traits to transcriptome differences in…

Draft genome of Larkinella sp. BK230 isolated…

Desert truffle genomes reveal their reproductive modes…

Can exascale computing and explainable artificial intelligence…

The small secreted effector protein MiSSP7.6 of…

Plasticity of Phymatotrichopsis onmivora infection strategies is…

Molecular changes concomitant with vascular system development…

Lectin receptor-like kinases: the sensor and mediator…

The mutualism effector MiSSP7 of Laccaria bicolor alters the…

DISCo-microbe:  Design of an identifiable synthetic community…

An ectomycorrhizal fungus alters sensitivity to jasmonate,…

Computationally-guided discovery and experimental validation of indole-3-acetic…

Role of Jasmonates in Beneficial Microbe-Root Interactions…

Integrated proteomics and lipidomics reveal that the…

Complete genome sequence of Terriglobus albidus strain…

Relatively rare root endophytic bacteria drive plant…

Insight into a highly polymorphic endophyte isolated…

Microfluidics and metabolomics reveal symbiotic bacterial-fungal interactions…

Laccaria bicolor MiSSP8 is a small-secreted protein…

Subsidized or stressed?  Shifts in freshwater benthic…

The ectomycorrhizal fungus Laccaria bicolor produces lipochitooligosaccharides…

Plant host-associated mechanisms for microbial selection Piet…

Label-free time- and space-resolved exometabolite sampling of…

Differences in resource use lead to coexistence…

Pore-scale hydrodynamics influence the spatial evolution of…

Mediation of plant-mycorrhizal interaction by a lectin…

Wavelet-based genomic signal processing for centromere identification…

Terpene synthase genes originated from bacteria through…

Increasing access to microfluidics for studying fungi…

Multi-phenotype association decomposition:  unraveling complex gene-phenotype relationships…

Exploiting the dynamic relationship between peptide separation…

Loss of carotenoids from membranes of Pantoea…

Rhizosphere microbiomes diverge among Populus trichocarpa plant-host…

Molecular signalling during the ectomycorrhizal symbiosis Clément…

Parallel accelerated custom correlation coefficient calculations for…

Data Integration in Poplar: “Omics Layers and…

A high-performance computing implementation of iterative random…

Fungal-bacterial networks in the Populus rhizobiome are…

Identification of Populus small RNAs responsive to…

Fungal endophytes of Populus trichocarpa alter host…

Climate-driven reduction of genetic variation in plant…

Genome-resolved proteomic stable isotope probing of soil…

Isolation and Whole-Genome Sequencing of Environmental Campylobacter…

Exploring variation in phyllosphere microbial communities across…

Regulation of lignin biosynthesis and its role…

Association mapping, transcriptomics, and transient expression identify…

Underground azelaic acid-conferred resistance to Pseudomonas syringae…

Exploration of the biosynthetic potential of the…

A plant-responsive bacterial-signaling system senses an ethanolamine…

An aryl-homoserine lactone quorum-sensing signal produced by…

Elucidating the potential of crude cell extracts…

Methanogenic Archaea dominate mature heartwood habitats of…

Genome-wide association studies and expression-based quantitative trait…

A variable polyglutamine repeat affects sub cellular…

Two new endophytic Atractiellomycetes, Atractidochium hillarie and…

Modification of plant cell wall chemistry impacts…

The ectomycorrhizal basidiomycete Laccaria bicolor releases a…

Parallel Accelerated Vector Similarity Calculations for Genomics…

Bacterial biofilm formation on the hyphae of…

Nano-enabled approaches to chemical imaging in biosystems…

Quantifying the spatiotemporal dynamics of plant root…

Mycorrhizal Microbiomes Mika T. Tarkka, Barbara Drigo,…

The origin and evolution of mycorrhizal symbioses: …

Attacking the opioid epidemic: Determining the epistatic…

Characterization of Indole-3-acetic acid biosynthesis and the effects of this phytohormone on the proteome of the plant-associated microbe Pantoea sp. YR343

Bacterial - fungal interactions: Ecology, mechanisms, and challenges

Secretome analysis from the ectomycorrhizal ascomycete Cenococcum geophilum

Elucidating duramycing bacterial selectivity and mode of action on the bacterial cell envelope

Abiotic stresses shift belowground Populus-associated bacteria toward a core stress microbiome

High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis

The Populus holobiont: dissecting the effects of plant niches and genotype on the microbiome

Russulaceae: A new genomic dataset to study ecosystem function and evolutionary diversification of ectomycorrhizal fungi with their tree associates

The nature of the progression of drought…

Chryseobacterium populi sp. nov., isolated from  Populus deltoides…

Phytobiome and transcriptional adaptation of Populus deltoides…

Proteomics-based tools for evaluation of cell-free protein synthesis

Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor

Assessment of genome annotation using gene function similarity within the gene neighborhood

Imaging the root hair morphology of Arabidopsis seedlings in a two-layer microfluidic platform

A case study into microbial genome assembly gap sequences and finishing strategies

Ancestral alliances: Plant mutualistic symbioses with fungi and bacteria

"Hot Stuff": the many uses of a radiolabel assay in detecting acyl-homoserine lactone quorum sensing signals.

Characterization of a novel, ubiquitous fungal endophyte from the rhizosphere and root endosphere of Populus trees

Populus trichocarpa encodes small, effector-like secreted proteins that are highly induced during mutualistic symbiosis

The ectomycorrhizal basidiomycete Hebeloma cylindrosporum undergoes early waves of transcriptional reprogramming prior to symbiotic structures differentiation

Diverse Plant-Associated Pleosporalean Fungi from Saline Areas: Ecological Tolerance and Nitrogen-Status Dependent Effects on Plant Growth

The Identification of Phytohormone Receptor Homologs in Early Diverging Fungi Suggests a Role for Plant Sensing in Land Colonization by Fungi

Comparative and Functional Genomics of Ectomycorrhizal Symbiosis

Network Metamodeling: Effect of Correlation Metric Choice on Phylogenomic and Transcriptomic Network Topology

Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens

Comparative genomics and expression levels of hydrophobins from eight mycorrhizal genomes

Viral Phylogenomics Using an Alignment-Free Method: A Three-Step Approach to Determine Optimal Length of k-mer

Atractiella rhizophila sp. nov., an endorrhizal fungus isolated from the Populus root microbiome

Quantitative proteome profile of water-deficit stress responses in eastern cottonwood (Populus deltoides) leaves

Progress in and promise of bacterial quorum sensing research

Genomic features of bacterial adaptation to plants

Automated interpretation and extraction of topographic information from time of flight secondary ion mass spectrometry data

Do fungi have an innate immune response? An NLR-based comparison to plant and animal immune systems.

Integrated Proteomics and Metabolomics Suggests Symbiotic Metabolism and Multimodal Regulation in a Fungal-Endobacterial System

A New Method for Qualitative Multiscale Analysis of Bacterial Biofilms on Filamentous Fungal Colonies Using Confocal and Electron Microscopy

Signaling pathways driving the development of ectomycorrhizal symbiosis

Harnessing mycorrhizal genomics for biological insights

The evolution of the mycorrhizal lifestyles - a genomic perspective

Mycorrhiza helper bacteria

Molecular Mycorrhizal Symbiosis

Fungal and plant gene expression in the Tulasnella calospora-Serapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas

Genetic Bases of Fungal White Rot Wood Decay Predicted by Phylogenomic Analysis of Correlated Gene-Phenotype Evolution

ß-glucan unmasking in some Candida albicans mutants correlates with increases in cell wall surface roughness and decreases in cell wall elasticity

Unearthing the roots of ectomycorrhizal symbioses

Poplar PtabZIP1 positively regulates lateral root formation and flavonoid synthesis and enhance biomass growth under drought

Root bacterial endophytes alter plant phenotype, but not physiology

Down-regulation of KORRIGAN-like endo-β-1,4-glucanase genes impacts carbon partitioning, mycorrhizal colonization and biomass production in Populus

Ectomycorrhizal ecology is imprinted in the genome of the dominant symbiotic fungus Cenococcum geophilum

Specialized Microbiome of a Halophyte and its Role in Helping Non-Host Plants to withstand Salinity

Genome-wide analysis of lectin receptor-like kinases in Populus

Isolating a functionally relevant guild of fungi from the root microbiome of Populus

A LuxR homolog in a Cottonwood tree endophyte that activates gene expression in response to a plant signal or specific peptides

While-you-wait proteins? Producing biomolecules at the point of need

Enrichment of root endophytic bacteria from Populus deltoides and single-cell genomics analysis

Transgenic soybean overexpressing GmSAMT1 exhibits resistance to multiple-HG types of soybean cyst nematode Heterodera glycines

Role of secondary metabolites in the interaction between Pseudomonas fluorescens and soil microorganisms under iron limited conditions

The Sphagnum microbiome: new insights from an ancient plant lineage

Two poplar-associated bacterial isolates induce additive favorable responses in a constructed plant-microbiome system

A carotenoid-deficient mutant in Pantoea sp. YR343, a bacteria isolated from the rhizosphere of Populus deltoides, is defective in root colonization

Understanding plant cell-wall remodelling during the symbiotic interaction between Tuber melanosporum and Corylus avellana using a carbohydrate microarray

Chapter Five: The Sphagnum Genome Project: A new model for ecological and evolutionary genomics

Characterization of DWARF14 genes in Populus

Computational ranking of yerba mate small molecules…

The Small Ethylene Response Factor ERF96 is Involved in the Regulation of the Abscisic Acid Response in Arabidopsis

Comparative Analysis of Secretomes from Ectomycorrhizal Fungi with an Emphasis on Small-Secreted Proteins

Draft Genome Sequences of Four Streptomyces Isolates from the Populus trichocarpa Root Endosphere and Rhizosphere

Microstencils to generate defined, multi-species patterns of bacteria

Ectomycorrhizal fungi decompose soil organic matter using oxidative mechanisms adapted from saprotrophic ancestors

Diversity of Pseudomonas genomes, including Populus-associated isolates, as revealed by comparative genome analysis

Metabolic functions of Pseudomonas fluorescens strains from…

PanFP: Pangenome-based functional profiles for microbial communities.…

Comparative genomics, proteomics and transcriptomics give new insight into the exoproteome of the basidiomycete Hebeloma cylinddrosporum and its involvement in ectomycorrhizal symbiosis

Reconsidering mutualistic plant-fungal interactions through the lens of effector biology

Development of the Poplar-Laccaria bicolor ectomycorrhiza Modifies Root Auxin Metabolism, Signaling, and Response

Functional guild classification predicts the enzymatic role of fungi in litter and soil biogeochemistry

Metagenome sequence of Elaphomyces granulatus from sporocarp tissue reveals Ascomycota ectomychorrhizal fingerprints of genome expansion and a Proteobacteria-rich microbiome

hosphorylation of RACK1 in plants

Sequence data for Clostridium autoehanogenum using three generations of sequencing technologies

ALD1 regulates the basal immune components and early inducible defense responses in Arabidopsis.

3-way Networks: Application of Hypergraphs for Modelling Increased Complexity in Comparative Genomics

The mutualist Laccaria bicolor expresses a core gene regulon during the colonization of diverse host plants and a variable regulon to counteract host-specific defenses

Insights from 20 years of bacterial genome sequencing

Convergent losses of decay mechanisms and rapid turnover of symbiosis genes in mycorrhizal mutualists

Evolving insights to understanding mycorrhizas

Mycorrhizal ecology and evolution: the past, the present and the future

Prospects and challenges for fungal metatranscriptomics of complex communities

Sphagnum physiology in the context of changing climate: emergent influences of genomics, modelling and host–microbiome interactions on understanding ecosystem function

Towards a holistic understanding of the beneficial interactions across the Populus microbiome

Expanding genomics of mycorrhizal symbiosis

Quality scores for 32,000 genomes

Newly identified helper bacteria stimulate ectomycorrhizal formation in Populus

Genomic and transcriptomic analysis of Laccaria bicolor CAZome reveals insights into polysaccharides remodelling during symbiosis establishment

Selective herbivory by an invasive cyprinid, the rudd Scardinius erythrophthalmus

MIDAS: A Database-Searching Algorithm for Metabolite Identification in Metabolomics

Characterization of MORE AXILLARY GROWTH Genes in Populus

Latent homology and convergent regulatory evolution underlies the repeated emergence of yeasts

Duplications and losses in gene families of rust pathogens highlight putative effectors

Plant host and soil origin influence fungal and bacterial assemblages in the roots of woody plants

Extensive sampling of basidiomycete genomes demonstrates inadequacy of the white-rot/brown-rot paradigm for wood decay fungi

Fungal biology: compiling genomes and exploiting them

Evaluation and validation of de novo and…

Effector MiSSP7 of the mutualistic fungus Laccaria bicolor stabilizes the Populus JAZ6 protein and represses jasmonic acid (JA) responsive genes

Transgenic American chestnuts show enhanced blight resistance and transmit the trait to T1 progeny

Comparison of single-molecule sequencing and hybrid approaches for finishing the genome of Clostridium autoethanogenum and analysis of CRISPR systems in industrial relevant Clostridia

Metabolic Environments and Genomic Features Associated with Pathogenic and Mutualistic Interactions between Bacteria and Plants

Strigolactone-Regulated Proteins Revealed by iTRAQ-Based Quantitative Proteomics in Arabidopsis

Populus trichocarpa and Populus deltoides Exhibit Different Metabolomic Responses to Colonization by the Symbiotic fungus Laccaria bicolor

Genome Sequence of the Mycorrhizal Helper Bacterium Pseudomonas fluorescens BBc6R8

Ethylene and jasmonic acid act as negative modulators during mutualistic symbiosis between Laccaria bicolor and Populus roots

Genome resequencing in Populus. Revealing large-scale genome…

Evolutionary analyses of non-family genes in plants

Single cell swimming dynamics of Listeria monocytogenes…

The Mycorrhizal Symbiosis Genomics Francis Martin and…

The Ecological Genomics of Fungi Francis Martin…

Genome of an arbuscular mycorrhizal fungus provides…

A Multifactor analysis of fungal and bacterial…

Mycorrhizas and New Phytologist: une vraie historie…

Leaf endophytes and Populus genotype affect severity…

Carbohydrate utilization and metabolism is highly differentiated…

Repeated Elements in Filamentous Fungi with a…

Lectin-functionalized poly(glycidyl methacrylate)-block-poly(vinyldimethyl azlactone) surface scaffolds for…

Extreme diversification of the mating type-high-mobility group (MATA-HMG) gene family in a plant-associated arbuscular mycorrhizal fungus

New insights into ectomycorrhizal symbiosis evolution and…

LuxR- and LuxI-type quorum sensing circuits are prevalent in members of the Populus deltoides microbiome

Sipros/ProRata: a versatile informatics system for quantitative community proteomics

Identification, characterization of an AP2/ERF transcriptional factor that promotes adventitious lateral root formation in Populus

Microbe-independent entry of oomycete RxLR effectors and fungal RxLR-Like effectors into plant and animal cells is specific and reproducible

A Dual Role of Strigolactones in Phosphate Acquisition and Utilization in Plants

Heterotrimeric G protein signaling in the plant kingdom

Who is controlling whom within ectomycorrhiza symbiosis: insights from genomic and functional analyses

Laser microdissection and microarray analysis of Tuber melanosporum ectomycorrhizas reveal functional heterogeneity between mantle and Hartig net compartments

Genome Anchored QTLs for Biomass Production in Hybrid Populus Grown Under Contrasting Environments

Comparative metagenomic and rRNA microbial diversity characterization using archaeal and bacterial synthetic communities

Inside arbuscular mycorrhizal roots-Molecular probes to understand the symbiosis

Ten years of genomics for ectomycorrhizal fungi: what have we achieved and where are we headed?

Temperature-Dependent Shade Avoidance Involves the Receptor-Like Kinase ERECTA

Involvement of auxin pathways in modulating root architecture during beneficial plant-microorganism interactions

Monodisperse alginate microgel formation in a three-dimensional microfluidic droplet generator

The AINTEGUMENTA LIKE1 homeotic transcription factor PtAIL1 controls the formation of adventitious root primordia in Poplar

Genome sequence of the button mushroom Agaricus bisporus reveals mechanisms governing adaptation to a humic-rich ecological niche

New North American truffles (Tuber spp.) and their ectomycorrhizal associations

Highly Efficient Isolation of Populus Mesophyll Protoplasts and Its Application in Transient Expression Assays

Twenty-One Genome Sequences from Pseudomonas Species and 19 Genome Sequences from Diverse Bacteria Isolated from the Rhizosphere and Endosphere of Populus deltoides

Initial characterization of shade avoidance response suggests functional diversity between Populus phytochrome B genes

De-constructing a mutualist: How the molecular blueprints of model symbiotic fungi are changing our understanding of mutualism

Characterization of Transposable Elements in the Ectomycorrhizal Fungus Laccaria bicolor

Gene and translation initiation site prediction in metagenomic sequences

Pseudomonas fluorescens Induces Strain-Dependent and Strain-Independent Host Plant Responses in Defense Networks, Primary Metabolism, Photosynthesis, and Fitness

Binding Motifs in Bacterial Gene Promoters Modulate Transcriptional Effects of Global Regulators CRP and ArcA

Analyzing large biological datasets with association networks

Communication Between Plant, Ectomycorrhizal Fungi and Helper Bacteria

System-wide Studies of N-Lysine Acetylation in Rhodopseudomonas palustris Reveal Substrate Specificity of Protein Acetyltransferases

Draft Genome Sequence of Rhizobium sp. Strain PDO1-076, a Bacterium Isolated from Populus deltoides

The importance of individuals: intraspecific diversity of mycorrhizal plants and fungi in ecosystems. -Tansley review-

Phylogenetic, genomic organization and expression analysis of hydrophobin genes in the ectomycorrhizal basidiomycete Laccaria bicolor

Enhancing a Pathway-Genome Database (PGDB) to capture subcellular localization of metabolites and enzymes: the nucleotide-sugar biosynthetic pathways of Populus trichocarpa

Signaling in ectomycorrhizal symbiosis

Molecular Interactions in Mycorrhizal Development

Poplar root exudates contain compounds that induce the expression of MiSSP7 in Laccaria bicolor

The M. truncatula SUNN gene is expressed in vascular tissue, similarly to RDN1, consistent with the role of these nodulation regulation genes in long distance signaling

Systematic Comparison of Label-Free, Metabolic Labeling, and Isobaric Chemical Labeling for Quantitative Proteomics on LTQ Orbitrap Velos

Secretome of the Free-living Mycelium from the Ectomycorrhizal Basidiomycete Laccaria bicolor

Genomic aspects of research involving polyploid plants…

The transcriptome of the arbuscular fungus Glomus intraradices (DAOM 197198) reveals functional tradeoffs in an obligate symbiont

Measuring Dissociation Rate Constants of Protein Complexes through Subunit Exchange: Experimental Design and Theoretical Modeling

Mutualistic Effectors: Architects of Symbiosis

Azospirillum Genomes Reveal Transition of Bacteria from Aquatic to Terrestrial Environments

Photoautotrophic symbiont and geography are major factors affecting highly structured and diverse bacterial communities in the lichen microbiome

Distinct Microbial Communities within the Endosphere and Rhizosphere of Populus deltoides Roots across Contrasting Soil Types.

Innovative biological solutions to challenges in sustainable biofuels production

Bacterial Immobilization for Imaging by Atomic Force Microscopy

Comparative physiology and transcriptional networks underlying the heat shock response in Populus trichocarpa, Arabidopsis thaliana and Glycine max

Structure and Expression Profile of the Phosphate Pht1 Transporter Gene Family in Mycorrhizal Populus trichocarpa

Abscisic acid receptors: past, present and future

A Secreted Effector Protein of Laccaria bicolor is Required for Symbiosis Development

Mutualistic interactions on a knife-edge between saprotrophy and pathogenesis

Tapping Genomics to Unravel Ectomycorrhizal Symbiosis

Sequencing the fungal tree of life

Discovery and annotation of small proteins using genomics, proteomics, and computational approaches

Identification of quantitiative trait loci affecting ectomycorrhizal symbiosis in an interspecific F1 poplar cross and differentail expression of genes in ectomycorrhizas of the two parents: Populus deltoides and Populus trichocarpa.

Survey and analysis of simple sequence repeats in the Laccaria bicolor genome, with development of microsatellite markers

Blurred boundaries: lifestyle lessons from ectomycorrhizal fungal genomes.

Characterization of cell surface and extracellular matrix remodeling of Azospirillum brasilense chemotaxis-like 1 signal transduction pathway mutants by atomic force microscopy.

Apoplast proteome reveals that extracellular matrix contributes to multistress response in poplar

CAZymes Analysis Toolkit (CAT): Web service for searching and analyzing carbohydrate-active enzymes in a newly sequenced organism using CAZy database

Shewanella knowledgebase: integration of the experimental data and computational predictions suggests a biological role for transcription of intergenic regions

Biosynthesis and emission of insect-induced methyl salicylate and methyl benzoate from rice.