Publications
2024
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Seethepalli et al. 2024 bioRxiv
Divide and conquer: Using RhizoVision Explorer to…
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Appidi et al. 2024 Phytobiomes
Unraveling bacterial adaptation strategies in the microbiome…
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LeBoldus et al. 2024 Annual Review Phytopathology
Biotechnology and Genomic Approaches to Mitigating Disease…
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Rush et al. 2024 mSystems
Fungal Elemental Profiling Unleashed Through Rapid Laser-Induced…
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Fracchia et al. 2024 Microbiome
A Small Secreted Protein Serves as a…
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Yang et al. 2024 Horticulture Research
A Small Secreted Protein Serves as a…
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Sword et al. 2024 Scientific Reports
Profiling Expression Strategies for a Type III…
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Beattie et al. 2024 Phytopathology
From microbes to microbiomes: Applications for plant…
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Fracchia et al. 2024 bioRxiv
Microbe tree metabolite interactions in the soil…
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Plett et al. 2024 The Mycota
Masters of Manipulation: How Our Molecular Understanding…
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Wang et al. 2024 mSystems
Formation of a constructed microbial community in…
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Simon et al. 2024 New Phytologist
Genetic underpinnings of arthropod community distributions in Populus…
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Mudbhari et al. 2023 mSystems
Decoding the chemical language of Suillus fungi:…
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Lash et al. 2024 Functional Ecology
Ant handling changes myrmecochore seed coat microbiomes…
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Argiroff et al. 2024 mSystems
Seasonality and longer-term development generate temporal dynamics…
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Marqués-Gálvez J.E. et al. 2024 New Phytologist
Populus MYC2 orchestrates root transcriptional reprogramming of defence…
2023
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Lee J. H. et al. 2023. Plant Methods
A rapid assay for assessing bacterial effects…
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O’Banion B. S., et al. 2023. Current Biology
Plant myo–inositol transport influences bacterial colonization phenotypes…
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Vigneaud J., et al. 2023. New Phytologist
DNA hypomethylation of the host tree impairs…
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Suo Z., et al. 2023. mBio
A Mesorhizobium japonicum quorum sensing circuit that involves three…
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Yao T., et al. 2023. Horticulture Research
CRISPR/Cas9-based gene activation and base editing in…
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Dinglasan and Doktycz, 2023. Synthetic Biology
Rewiring Cell-free Metabolic Flux in E. coli Lysates using…
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Dinglasan J. L. N., et al. 2023. ACS Synthetic Biology
Investigating and Optimizing the Lysate-Based Expression of…
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Shrestha, H., 2023. Cells
Lectin Receptor-like Kinase Signaling during Engineered Ectomycorrhiza…
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Vigneaud, J., et al. 2023. New Phytologist
DNA hypomethylation of the host tree impairs…
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Dahal, S., 2023. Metabolites
Mechanism for Utilization of the Populus-Derived Metabolite…
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Tomaž, Š., et al. 2023. Plant Physiology
A mini-TGA protein modulates gene expression through…
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Pavlopoulos G. A. 2023. Nature
Unraveling the Functional Dark Matter Through Global…
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Gopalakrishnan Meena M. et al. 2023. PNAS Nexus
A Glimpse into the Fungal Metabolomic Abyss:…
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Golan J. J. et al. 2023. Fungal Ecology
Differences in Spore Size and Atmospheric Survival…
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de Freitas Pereira M. et al. 2023. The Plant Journal
Ectomycorrhizal symbiosis prepares its host locally and…
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Cope, K. R., et al. 2023 Comput. Struct. Biotechnol. J.
Exploring the role of plant lysin motif…
2022
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Halsted, M. C., et al. 2022. Biofilm
Quantifying biofilm propagation on chemically modified surfaces…
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Carper, D. L., et al. 2022. Microorganisms
The Promises, Challenges, and Opportunities of Omics…
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Langergren, J. et al. 2022. Phytobiomes Journal
Climatic clustering and longitudinal analysis with impacts…
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Marqués-Gálvez, J. E. et al. 2022. PNAS
The establishment of Populus x Laccaria bicolor…
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Walton et al. 2022. J. Am. Soc. Mass Spectrom.
In Situ Detection of Amino Acids from…
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Hassan MM et. al. 2022. Biotechnology Journal
Precision Genome Editing in Plants Using Gene…
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Dove, NC et al. 2022. mSystems
Relationships between Sphaerulina musiva Infection and the…
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Veneault-Fourrey, C. et al. 2022. Microbial Cross-talk in the Rhizosphere. Rhizosphere Biology.
Ectomycorrhizal Symbiosis: From Genomics to Trans-Kingdom Molecular…
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Plett, J et al. 2022. Environmental Microbiology
Mycorrhiza-induced mycypins of Laccaria bicolor are potent…
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Viacava, K. et al. 2022. ISME Journal
Meta-omics-aided isolation of an elusive anaerobic arsenic-methylating…
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Hu, Xiao-Li et al. 2022. Horticulture Research
Diversity and conservation of plant small secreted…
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Barge, E.G. et al., 2022. Molecular Ecology
Phylogenetic conservatism of mycoparasitism and its contribution…
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Appidi, MR et al., 2022. Molecular Plant-Microbe Interactions
Development of an experimental approach to achieve…
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Aufrecht, JA et al., 2022. Lab on A Chip
Hotspots of root exuded amino acids are…
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Villalobos Solis, MI et al., 2022. Frontiers in Fungal Biology
Expanding the biological role of lipo-chitooligosaccharides and…
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Rush, T. A., et al. 2022. mSystems
Lipo-Chitooligosaccharides Induce Specialized Fungal Metabolite Profiles That…
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Meslier, V., et al. 2022. Scientific Data
Benchmarking second and third-generation sequencing platforms for…
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Yan, L., et al. 2022. Biodesign Research
Biological and Molecular Components for Genetically Engineering…
2021
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Wolf, M. et al., 2021 IEEE International Conference on Cluster Computing
Reusability First: Toward FAIR Workflows Matthew Wolf,…
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Dinglasan, JLN et al., 2021. JoVE
Liquid chromatography coupled to refractive index of…
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Rush, T. A. et al., 2021. Frontiers in Fungal Biology
Bioprospecting Trichoderma: A systematic roadmap to screen genomes and…
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Devireddy, A. R., 2021. International Journal of Molecular Sciences
Role of reactive oxygen species and hormones…
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Hsieh, J-F et al., 2021. Plant-Environment Interactions
Characterization of terpene biosynthesis in Melaleuca quinquenervia and…
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Barua, N. et al. 2021. Frontiers in Microbiology
Simultaneous discovery of positive and negative interactions…
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Qiao, Z., et al., 2021. Plant Biotechnology Journal
Towards engineering ectomycorrhization into switchgrass bioenergy crops…
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Ware, I. M., et al., 2021. Communications Biology
Climate-driven divergence in plant-microbiome interactions generates range-wide…
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Hu, X-L. et al., 2021. Horticulture Research
Advances and perspectives in discovery and functional…
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Carper, D.L., et al., 2021. MSystems
Cultivating the Bacterial Microbiota of Populus Roots Dana L.…
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Wang, J., et al., 2021. Computational and Structural Biotechnology J.
Formation, characterization and modeling of emergent synthetic…
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Dove, N. C., et al., 2021. mSphere
Assembly of the Populus microbiome is temporally…
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Drott, M., et al., 2021. PNAS
Microevolution in the pansecondary metabolome of Aspergillis flavus and…
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Fracchia, F. et al., 2021. Applied and Environmental Microbiology
Colonization of naive roots from Populus tremula x alba…
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Pavicic, M., et al., 2021. Plants (Basel)
Image-Based Methods to Score Fungal Pathogen Symptom…
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Vélez, J., et al. 2021. PLoS ONE
Phylogenetic diversity of 200+ isolates of the…
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Lenz, R et al. 2022. Phytopathology
Metabolic patterns in Septoria canker resistant and…
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Luo, S. et al., 2021. PNAS
Structural basis for a bacterial Pip system…
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Cregger, M. A. et al., Phytobiomes Journal
Plant-Microbe Interactions: From Genes to Ecosystems Using Populus as…
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Dove, N. et al., 2021. New Phytologist
Fire alters plant microbiome assembly patterns: integrating…
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Jiang, S-C. et al., 2021. Journal of Experimental Botany
ALD1 accumulation in Arabidopsis epidermal plastids confers local and…
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Garcia, D. C. et al., 2021. Metabolic Engineering Communications
A lysate proteome engineering strategy for enhancing…
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Sawyer, C., et al. 2021. Fungal Genomics & Biology
Small RNAs at the interface of the…
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Hill, RA et al., 2021. New Phytologist
Abscisic acid supports colonization of Eucalyptus grandis roots by…
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Zhang, F et al., 2021. New Phytologist
The ectomycorrhizal basidiomycete Laccaria bicolor releases a GH28 polygalacturonase…
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Ruytinx, J et al., 2021. Microorganisms
A transcriptomic atlas of the ectomycorrhizal fungus Laccaria…
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Veneault-Fourrey, C and Rep M. 2021. New Phytologist
Quantitative resistance linked to late effectors Claire…
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Looney, B et al., 2021. New Phytologist
Evolutionary transition to the ectomycorrhizal habit in…
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Shrestha, HK et al., 2021. BMC Microbiology
Metaproteomics reveal insights into microbial structure, interaction,…
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Liao, H-L et al., 2021. Frontiers in Microbiology
Heterospecific neighbor plants impact root microbiome diversity…
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Garcia, BJ et al., 2021. Computational and Structural Biotechnology Journal
A k-mer based approach for classifying viruses…
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Yates T., et al., 2021. Genome Biology and Evolution
The ancient Salicoid genome duplication event: A…
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Hassan, MM et al., 2021. Trends in Plant Sciences
Construct design for CRISPR/Cas-based genome editing in…
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Bible A. N. et al. 2021. PLoS ONE
Identification of a diguanylate cyclase expressed in…
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Yao, T., et al. 2021. Frontiers in Plant Sciences
Transcriptional regulation of drought response in Arabidopsis and woody…
2020
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Jones, P., et al. 2020., Metabolic Engineering Lab Protocol Series
Network modeling of complex data sets Piet…
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Lawrence, T. J., et al. 2020. Bioinformatics
amPEPpy 1.0: A portable and accurate antimicrobial…
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Mohr, B. et al., 2020. ACS Synthetic Biology
Targeted Growth Medium Dropouts Promote Aromatic Compound…
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Miyauchi, S., et al. 2020. Nature Communications
Large-scale genome sequencing of mycorrhizal fungi provides…
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Abraham, P. E. et al., 2020. Proteomics
Molecular remodeling in Populus PdKOR RNAi roots profiled using…
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North, J. A., et al. 2020. Science
A nitrogenase-like enzyme system catalyzes methionine, ethylene,…
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Vijaya Kumar, S., et al. 2020. Scientific Reports
A carotenoid-deficient mutant of the plant-associated microbe Pantoea sp.…
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Onufrak, A. J., et al. 2020. Phytobiomes Journal
Regional Differences in the Structure of Juglans nigra Phytobiome…
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Lu, H., et al. 2020. BioDesign Research
Reconfiguring plant metabolism for biodegradable plastic production…
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Saint-Vincent, P. M. B., et al. 2020. Microorganisms
Isolation, characterization, and pathogenicity of two Pseudomonas syringae pathovars…
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Behr, M., et al. 2020. Mycorrhiza
Alterations in the phenylpropanoid pathway affect poplar…
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Plett, J. M., et al. 2020. New Phytologist
Mycorrhizal effector PaMiSSP10b alters polyamine biosynthesis in Eucalyptus root…
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Xie, M., et al. 2020. New Phytologist
Arabidopsis C-terminal binding protein ANGUSTIFOLIA modulates transcriptional…
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Rush, T., et al. 2020. Nature Communications
Lipo-chitooligosaccharides as regulatory signals of fungal growth…
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Yang, X. et al., 2020. BioDesign Research
Plant Biosystems Design Research Roadmap 1.0 Xiaohan…
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Nash, J., et al. 2020. Plant and Soil
Ectomycorrhizal fungal diversity interacts with soil nutrients…
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Hassan, Md. M., et al. 2020. BioDesign Research
Prime Editing Technology and Its Prospects for…
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Søndreli, K.L. et al. 2020. Plant Disease
An outbreak of Septoria cancer caused by…
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Dove, N., et al., 2020. Frontiers in Microbiology
Microbiome variation across two hemlock species with…
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Villalobos Solis, M. I., et al., 2020. MPMI
A viable new strategy for the discovery…
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Podar, M., et al., 2020. Microbiology Resource Announcements
Complete Genome Sequence of Starkeya sp. Strain ORNL1, a…
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Podar, M., et al., 2020. Microbiology Resource Announcements
Complete Genome Sequence of the Novel Roseimicrobium sp. Strain…
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Veach, A. M., et al., 2020. mSystems
Plant hosts modify belowground microbial community response…
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Carper, D., et al., 2020. Microbiology Resource Announcements
Draft genome sequence of Tumebacillus sp. BK434,…
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Khalid, M., et al., 2020. Wiley’s Imaging and Microscopy Journal
Nano-enabled chemical imaging Muneeba Khalid, Mitchel J.…
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Kalluri, U. C., et al., 2020. AAAS BioDesign Journal
Plant Biosystmes Design for a Carbon-Neutral Bioeconomy…
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Casarrubia, S., et al., 2020. Frontiers in Microbiology
Modulation of plant and fungal gene expression…
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Ellis, J. C. 2020. BMC Genomics
P Finder: Genomic and metagenomic annotation of…
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Mangeot-Peter, L. et al., 2020. Phytobiomes Journal
Impacts of soil microbiome variations on root…
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Simon, S. J., et al. 2020. Ecology and Evolution
Host plant genetic control of associated fungal…
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Alexandersson, E., et al. 2020. BMC Plant Biology
Linking crop traits to transcriptome differences in…
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Pelletier, D. A. et al. 2020. Microbiology Resource Announcements
Draft genome of Larkinella sp. BK230 isolated…
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Marqués-Gálvez JE et al., 2020. New Phytologist
Desert truffle genomes reveal their reproductive modes…
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Streich J. et al., 2020. Current Opinion in Biotechnology
Can exascale computing and explainable artificial intelligence…
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Kang, H., et al. 2020. Environmental Microbiology
The small secreted effector protein MiSSP7.6 of…
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Kankanala, P. et al. 2020. Plant, Cell & Environment
Plasticity of Phymatotrichopsis onmivora infection strategies is…
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Baldacci-Cresp, F. et al. 2020. International Journal of Molecular Sciences
Molecular changes concomitant with vascular system development…
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Sun, Y., et al. 2020. Frontiers in Plant Sciences
Lectin receptor-like kinases: the sensor and mediator…
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Daguerre, Y., et al. 2020. Scientific Reports
The mutualism effector MiSSP7 of Laccaria bicolor alters the…
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Carper, D. L. et al., 2020. PeerJ
DISCo-microbe: Design of an identifiable synthetic community…
2019
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Basso, V. et al., 2019. Plant, Cell & Environment
An ectomycorrhizal fungus alters sensitivity to jasmonate,…
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Garcia, D. C., et al., 2019. ACS Chemical Biology
Computationally-guided discovery and experimental validation of indole-3-acetic…
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Basso, V., et al. 2019. Methods of Molecular Biology
Role of Jasmonates in Beneficial Microbe-Root Interactions…
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Poudel, S., et al., 2019. Frontiers in Microbiology
Integrated proteomics and lipidomics reveal that the…
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Podar, M., et al., 2019. ASM Microbiology Resource Announcements
Complete genome sequence of Terriglobus albidus strain…
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Henning, J. A., et al., 2019. American Journal of Botany
Relatively rare root endophytic bacteria drive plant…
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Yuan, Z., et al., 2019. Fungal Biology
Insight into a highly polymorphic endophyte isolated…
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Uehling, J., et al., 2019. Frontiers in Microbiology
Microfluidics and metabolomics reveal symbiotic bacterial-fungal interactions…
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Pellegrin, C. et al., 2019. Environmental Microbiology
Laccaria bicolor MiSSP8 is a small-secreted protein…
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Bier, R. L., et al. 2019. Limnology and Oceanography
Subsidized or stressed? Shifts in freshwater benthic…
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Labbé, J. et al., 2019. Plant Cell
The ectomycorrhizal fungus Laccaria bicolor produces lipochitooligosaccharides…
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Jones, P. et al., 2019. Frontiers in Plant Sciences
Plant host-associated mechanisms for microbial selection Piet…
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Patabadige, D.E. et al., 2019. Scientific Reports
Label-free time- and space-resolved exometabolite sampling of…
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Torres-Cortés et al., 2019. Scientific Reports
Differences in resource use lead to coexistence…
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Aufrecht, J., et al. 2019. PLoS ONE
Pore-scale hydrodynamics influence the spatial evolution of…
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Labbé, J., et al., 2019. Nature Plants
Mediation of plant-mycorrhizal interaction by a lectin…
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Weighill, D. et al., 2019. Frontiers in Genetics
Wavelet-based genomic signal processing for centromere identification…
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Jia et al., 2019. Scientific Reports
Terpene synthase genes originated from bacteria through…
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Millet, L. J., et al. 2019. Fungal Biology and Biotechnology
Increasing access to microfluidics for studying fungi…
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Weighill, D. et al., 2019. Frontiers in Genetics
Multi-phenotype association decomposition: unraveling complex gene-phenotype relationships…
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Villalobos Solis, M. et al., 2019. Analytical Chemistry
Exploiting the dynamic relationship between peptide separation…
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Vijaya Kumar, S. et al., 2019. BBA-Biomembranes
Loss of carotenoids from membranes of Pantoea…
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Veach, A. M., et al. 2019. Microbiome
Rhizosphere microbiomes diverge among Populus trichocarpa plant-host…
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Pellegrin, C., et al. 2019. The Mycota vol. VIII
Molecular signalling during the ectomycorrhizal symbiosis Clément…
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Joubert, W., et al. 2019. Parallel Computing
Parallel accelerated custom correlation coefficient calculations for…
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Weighill, D. et al., 2019. Frontiers in Genetics
Data Integration in Poplar: “Omics Layers and…
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Cliff, A., et al. 2019. Genes
A high-performance computing implementation of iterative random…
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Bonito, G. M., et al., 2019. Frontiers in Microbiology
Fungal-bacterial networks in the Populus rhizobiome are…
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Mewalal, R. et al., 2019. Frontiers in Microbiology
Identification of Populus small RNAs responsive to…
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Liao, H-L., et al., 2019. MPMI
Fungal endophytes of Populus trichocarpa alter host…
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Ware, I. M., et al., 2019. Global Change Biology
Climate-driven reduction of genetic variation in plant…
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Li, Z. et al., 2019. Frontiers in Microbiology
Genome-resolved proteomic stable isotope probing of soil…
2018
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Kelley, B. R., et al., 2018. Current Protocols in Microbiology
Isolation and Whole-Genome Sequencing of Environmental Campylobacter…
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Rogers, T. J., et al., 2018. Ecosphere
Exploring variation in phyllosphere microbial communities across…
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Xie, M. et al., 2018. Frontiers in Plant Science
Regulation of lignin biosynthesis and its role…
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Muchero, W. et al., 2018. PNAS
Association mapping, transcriptomics, and transient expression identify…
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Cecchini et al., 2018. MPMI
Underground azelaic acid-conferred resistance to Pseudomonas syringae…
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Blair, P. et al., 2018. mSystems
Exploration of the biosynthetic potential of the…
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Coutinho, B. et al., 2018. PNAS
A plant-responsive bacterial-signaling system senses an ethanolamine…
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Liao, L. et al., 2018. PNAS
An aryl-homoserine lactone quorum-sensing signal produced by…
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Garcia, D. et al., 2018. Synthetic Biology
Elucidating the potential of crude cell extracts…
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Yip, D. et al., 2018. New Phytologist
Methanogenic Archaea dominate mature heartwood habitats of…
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Zhang, J. et al., 2018. New Phytologist
Genome-wide association studies and expression-based quantitative trait…
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Bryan, A. et al., 2018. G3
A variable polyglutamine repeat affects sub cellular…
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Aime, M. C. et al., 2018. Mycologia
Two new endophytic Atractiellomycetes, Atractidochium hillarie and…
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Veach, A. et al., 2018. Plant and Soil
Modification of plant cell wall chemistry impacts…
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Zhang, F. et al., 2018. New Phytologist
The ectomycorrhizal basidiomycete Laccaria bicolor releases a…
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Joubert, W. et al., 2018. Parallel Computing
Parallel Accelerated Vector Similarity Calculations for Genomics…
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Miquel Guennoc, C. et al., 2018. FEMS Microbiology Ecology
Bacterial biofilm formation on the hyphae of…
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Retterer, S. et al., 2018. Annual Review of Analytical Chemistry
Nano-enabled approaches to chemical imaging in biosystems…
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Aufrecht, J et al., 2018. Advanced Biosystems
Quantifying the spatiotemporal dynamics of plant root…
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Tarkka et al., 2018. Mycorrhiza
Mycorrhizal Microbiomes Mika T. Tarkka, Barbara Drigo,…
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Strullu-Derrien, C. et al, 2018. New Phytologist – Tansley Review
The origin and evolution of mycorrhizal symbioses: …
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Joubert, W., et al., 2018. SC’18
Attacking the opioid epidemic: Determining the epistatic…
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Estenson, K. et al., 2018. J. Proteome Research
Characterization of Indole-3-acetic acid biosynthesis and the effects of this phytohormone on the proteome of the plant-associated microbe Pantoea sp. YR343
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Deveau, A. et al., 2018. Fems Microbiology Reviews
Bacterial - fungal interactions: Ecology, mechanisms, and challenges
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de Freitas Pereira, M. et al., 2018. Frontiers in Microbiology
Secretome analysis from the ectomycorrhizal ascomycete Cenococcum geophilum
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Hasim, S. et al., 2018. Frontiers in Microbiology
Elucidating duramycing bacterial selectivity and mode of action on the bacterial cell envelope
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Timm, C. M. et al., 2018. M Systems
Abiotic stresses shift belowground Populus-associated bacteria toward a core stress microbiome
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Chen, E. et al., 2018. New Phytologist
High intraspecific genome diversity in the model arbuscular mycorrhizal symbiont Rhizophagus irregularis
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Cregger, M. et al., 2018. Microbiome
The Populus holobiont: dissecting the effects of plant niches and genotype on the microbiome
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Looney, B. et al., 2018. New Phytologist
Russulaceae: A new genomic dataset to study ecosystem function and evolutionary diversification of ectomycorrhizal fungi with their tree associates
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Tschaplinski, T. J., et al., 2018. Annals of Botany
The nature of the progression of drought…
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Bortniak, V. L., et al., 2018. International Journal of Systemic and Evolutionary Microbiology
Chryseobacterium populi sp. nov., isolated from Populus deltoides…
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Garcia, B. J. et al., 2018. Phytobiomes
Phytobiome and transcriptional adaptation of Populus deltoides…
2017
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Hurst, G. B. et al., 2017. Analytical Chemistry
Proteomics-based tools for evaluation of cell-free protein synthesis
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Daguerre, Y. et al., 2017. BMC Genomics
Regulatory networks underlying mycorrhizal development delineated by genome-wide expression profiling and functional analysis of the transcription factor repertoire of the plant symbiotic fungus Laccaria bicolor
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Jun, S-R. et al., 2017. BMC Bioinformatics
Assessment of genome annotation using gene function similarity within the gene neighborhood
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Aufrecht, J. A. et al., 2017. Journal of Visualized Experiments
Imaging the root hair morphology of Arabidopsis seedlings in a two-layer microfluidic platform
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Utturkar, S. et al., 2017. Frontiers in Microbiology
A case study into microbial genome assembly gap sequences and finishing strategies
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Martin, F. et al., 2017. Science
Ancestral alliances: Plant mutualistic symbioses with fungi and bacteria
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Schaefer, A. et al., 2017. Quorum Sensing: Methods and Protocols
"Hot Stuff": the many uses of a radiolabel assay in detecting acyl-homoserine lactone quorum sensing signals.
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Vélez, J. M. et al., 2017. Fungal Ecology
Characterization of a novel, ubiquitous fungal endophyte from the rhizosphere and root endosphere of Populus trees
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Plett, J. M. et al., 2017. Scientific Reports
Populus trichocarpa encodes small, effector-like secreted proteins that are highly induced during mutualistic symbiosis
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Doré, J. et al., 2017. Environmental Microbiology
The ectomycorrhizal basidiomycete Hebeloma cylindrosporum undergoes early waves of transcriptional reprogramming prior to symbiotic structures differentiation
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Qin, Y. et al., 2017. Frontiers in Microbiology
Diverse Plant-Associated Pleosporalean Fungi from Saline Areas: Ecological Tolerance and Nitrogen-Status Dependent Effects on Plant Growth
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Hérivaux, A. et al., 2017. mBio
The Identification of Phytohormone Receptor Homologs in Early Diverging Fungi Suggests a Role for Plant Sensing in Land Colonization by Fungi
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Ruytinx, J. and Martin F. 2017. The Fungal Community
Comparative and Functional Genomics of Ectomycorrhizal Symbiosis
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Weighill, D. A. and Jacobson, D. A. 2017. Advances in Biochemical Engineering/Biotechnology
Network Metamodeling: Effect of Correlation Metric Choice on Phylogenomic and Transcriptomic Network Topology
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Uehling, J. et al., 2017. Environmental Microbiology
Comparative genomics of Mortierella elongata and its bacterial endosymbiont Mycoavidus cysteinexigens
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Rineau, R. et al., 2017. Mycorrhiza
Comparative genomics and expression levels of hydrophobins from eight mycorrhizal genomes
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Zhang, Q. et al., 2017. Scientific Reports
Viral Phylogenomics Using an Alignment-Free Method: A Three-Step Approach to Determine Optimal Length of k-mer
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Bonito, G. et al., 2017. Mycologia
Atractiella rhizophila sp. nov., an endorrhizal fungus isolated from the Populus root microbiome
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Abraham, P. E. et al., 2017. PLoS ONE
Quantitative proteome profile of water-deficit stress responses in eastern cottonwood (Populus deltoides) leaves
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Whitely, M. et al., 2017. Nature
Progress in and promise of bacterial quorum sensing research
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Levy, A. et al., 2017. Nature Genetics
Genomic features of bacterial adaptation to plants
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Ievlev, A. V. et al., Scientific Reports
Automated interpretation and extraction of topographic information from time of flight secondary ion mass spectrometry data
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Uehling, J. et al, 2017. PLoS Pathogens Pearls
Do fungi have an innate immune response? An NLR-based comparison to plant and animal immune systems.
2016
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Li, Z. et al., 2016. Environmental Microbiology
Integrated Proteomics and Metabolomics Suggests Symbiotic Metabolism and Multimodal Regulation in a Fungal-Endobacterial System
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Guennoc, C. M. et al., 2016. Journal of Visualized Experiments
A New Method for Qualitative Multiscale Analysis of Bacterial Biofilms on Filamentous Fungal Colonies Using Confocal and Electron Microscopy
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Daguerre, Y. et al., 2016. Molecular Mycorrhizal Symbiosis
Signaling pathways driving the development of ectomycorrhizal symbiosis
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Francis Martin. 2016. Molecular Mycorrhizal Symbiosis.
Harnessing mycorrhizal genomics for biological insights
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Kohler, A. and Martin, F. 2016. Molecular Mycorrhizal Symbiosis
The evolution of the mycorrhizal lifestyles - a genomic perspective
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Deveau, A. and Labbé, J. 2016. Molecular Mycorrhizal Symbiosis
Mycorrhiza helper bacteria
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Francis Martin. 2016. Molecular Mycorrhizal Symbiosis
Molecular Mycorrhizal Symbiosis
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Fochi, V. et al., 2016. New Phytologist
Fungal and plant gene expression in the Tulasnella calospora-Serapias vomeracea symbiosis provides clues about nitrogen pathways in orchid mycorrhizas
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Highly Efficient Isolation of Populus Mesophyll Protoplasts and Its Application in Transient Expression Assays
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Characterization of Transposable Elements in the Ectomycorrhizal Fungus Laccaria bicolor
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Pseudomonas fluorescens Induces Strain-Dependent and Strain-Independent Host Plant Responses in Defense Networks, Primary Metabolism, Photosynthesis, and Fitness
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System-wide Studies of N-Lysine Acetylation in Rhodopseudomonas palustris Reveal Substrate Specificity of Protein Acetyltransferases
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Draft Genome Sequence of Rhizobium sp. Strain PDO1-076, a Bacterium Isolated from Populus deltoides
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Structure and Expression Profile of the Phosphate Pht1 Transporter Gene Family in Mycorrhizal Populus trichocarpa
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Tapping Genomics to Unravel Ectomycorrhizal Symbiosis
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Discovery and annotation of small proteins using genomics, proteomics, and computational approaches
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Identification of quantitiative trait loci affecting ectomycorrhizal symbiosis in an interspecific F1 poplar cross and differentail expression of genes in ectomycorrhizas of the two parents: Populus deltoides and Populus trichocarpa.
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